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Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus

Xylanase B, a member of subfamily 7 of the GH30 (glycoside hydrolase family 30) from Talaromyces cellulolyticus (TcXyn30B), is a bifunctional enzyme with glucuronoxylanase and xylobiohydrolase activities. In the present study, crystal structures of the native enzyme and the enzyme–product complex of...

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Autores principales: Nakamichi, Yusuke, Watanabe, Masahiro, Matsushika, Akinori, Inoue, Hiroyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7262913/
https://www.ncbi.nlm.nih.gov/pubmed/32359208
http://dx.doi.org/10.1002/2211-5463.12873
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author Nakamichi, Yusuke
Watanabe, Masahiro
Matsushika, Akinori
Inoue, Hiroyuki
author_facet Nakamichi, Yusuke
Watanabe, Masahiro
Matsushika, Akinori
Inoue, Hiroyuki
author_sort Nakamichi, Yusuke
collection PubMed
description Xylanase B, a member of subfamily 7 of the GH30 (glycoside hydrolase family 30) from Talaromyces cellulolyticus (TcXyn30B), is a bifunctional enzyme with glucuronoxylanase and xylobiohydrolase activities. In the present study, crystal structures of the native enzyme and the enzyme–product complex of TcXyn30B expressed in Pichia pastoris were determined at resolutions of 1.60 and 1.65 Å, respectively. The enzyme complexed with 2(2)‐(4‐O‐methyl‐α‐d‐glucuronyl)‐xylobiose (U(4m2)X) revealed that TcXyn30B strictly recognizes both the C‐6 carboxyl group and the 4‐O‐methyl group of the 4‐O‐methyl‐α‐d‐glucuronyl side chain by the conserved residues in GH30‐7 endoxylanases. The crystal structure and site‐directed mutagenesis indicated that Asn‐93 on the β2‐α2‐loop interacts with the non‐reducing end of the xylose residue at subsite‐2 and is likely to be involved in xylobiohydrolase activity. These findings provide structural insight into the mechanisms of substrate recognition of GH30‐7 glucuronoxylanase and xylobiohydrolase.
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spelling pubmed-72629132020-06-03 Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus Nakamichi, Yusuke Watanabe, Masahiro Matsushika, Akinori Inoue, Hiroyuki FEBS Open Bio Research Articles Xylanase B, a member of subfamily 7 of the GH30 (glycoside hydrolase family 30) from Talaromyces cellulolyticus (TcXyn30B), is a bifunctional enzyme with glucuronoxylanase and xylobiohydrolase activities. In the present study, crystal structures of the native enzyme and the enzyme–product complex of TcXyn30B expressed in Pichia pastoris were determined at resolutions of 1.60 and 1.65 Å, respectively. The enzyme complexed with 2(2)‐(4‐O‐methyl‐α‐d‐glucuronyl)‐xylobiose (U(4m2)X) revealed that TcXyn30B strictly recognizes both the C‐6 carboxyl group and the 4‐O‐methyl group of the 4‐O‐methyl‐α‐d‐glucuronyl side chain by the conserved residues in GH30‐7 endoxylanases. The crystal structure and site‐directed mutagenesis indicated that Asn‐93 on the β2‐α2‐loop interacts with the non‐reducing end of the xylose residue at subsite‐2 and is likely to be involved in xylobiohydrolase activity. These findings provide structural insight into the mechanisms of substrate recognition of GH30‐7 glucuronoxylanase and xylobiohydrolase. John Wiley and Sons Inc. 2020-05-22 /pmc/articles/PMC7262913/ /pubmed/32359208 http://dx.doi.org/10.1002/2211-5463.12873 Text en © 2020 The Authors. Published by FEBS Press and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Nakamichi, Yusuke
Watanabe, Masahiro
Matsushika, Akinori
Inoue, Hiroyuki
Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus
title Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus
title_full Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus
title_fullStr Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus
title_full_unstemmed Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus
title_short Substrate recognition by a bifunctional GH30‐7 xylanase B from Talaromyces cellulolyticus
title_sort substrate recognition by a bifunctional gh30‐7 xylanase b from talaromyces cellulolyticus
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7262913/
https://www.ncbi.nlm.nih.gov/pubmed/32359208
http://dx.doi.org/10.1002/2211-5463.12873
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