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Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data

Population genetics studies the distributions and changes in population allele frequencies in response to processes, such as mutation, natural selection, gene flow, and genetic drift. Researchers daily manage genetic, biological, and environmental data of the samples, storing them in text files or s...

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Detalles Bibliográficos
Autores principales: Elias, Dario Ezequiel, Rueda, Eva Carolina Rueda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Sociedade Brasileira de Genética 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7263200/
https://www.ncbi.nlm.nih.gov/pubmed/32478790
http://dx.doi.org/10.1590/1678-4685-GMB-2018-0272
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author Elias, Dario Ezequiel
Rueda, Eva Carolina Rueda
author_facet Elias, Dario Ezequiel
Rueda, Eva Carolina Rueda
author_sort Elias, Dario Ezequiel
collection PubMed
description Population genetics studies the distributions and changes in population allele frequencies in response to processes, such as mutation, natural selection, gene flow, and genetic drift. Researchers daily manage genetic, biological, and environmental data of the samples, storing them in text files or spreadsheets, which makes it difficult to maintain consistency and traceability. Here we present TEGA, a WEB-based stand-alone software developed for the easy analysis and management of population genetics data. It was designed to: 1) facilitate data management, 2) provide a way to execute the analysis procedures, and 3) supply a means to publish data, procedures, and results. TEGA is distributed under the GNU AGPL v3 license. The documentation, source code, and screenshots are available at https://github.com/darioelias/TEGA. In addition, we present Rabid Fish, the first implementation of TEGA in the Genetics Labortory of the Faculty of Humanities and Sciences at the National University of the Litoral, where research focuses on population genetics studies applied to non-model organisms.
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spelling pubmed-72632002020-06-10 Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data Elias, Dario Ezequiel Rueda, Eva Carolina Rueda Genet Mol Biol Evolutionary Genetics Population genetics studies the distributions and changes in population allele frequencies in response to processes, such as mutation, natural selection, gene flow, and genetic drift. Researchers daily manage genetic, biological, and environmental data of the samples, storing them in text files or spreadsheets, which makes it difficult to maintain consistency and traceability. Here we present TEGA, a WEB-based stand-alone software developed for the easy analysis and management of population genetics data. It was designed to: 1) facilitate data management, 2) provide a way to execute the analysis procedures, and 3) supply a means to publish data, procedures, and results. TEGA is distributed under the GNU AGPL v3 license. The documentation, source code, and screenshots are available at https://github.com/darioelias/TEGA. In addition, we present Rabid Fish, the first implementation of TEGA in the Genetics Labortory of the Faculty of Humanities and Sciences at the National University of the Litoral, where research focuses on population genetics studies applied to non-model organisms. Sociedade Brasileira de Genética 2020-05-29 /pmc/articles/PMC7263200/ /pubmed/32478790 http://dx.doi.org/10.1590/1678-4685-GMB-2018-0272 Text en https://creativecommons.org/licenses/by/4.0/ License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License (type CC-BY), which permits unrestricted use, distribution and reproduction in any medium, provided the original article is properly cited.
spellingShingle Evolutionary Genetics
Elias, Dario Ezequiel
Rueda, Eva Carolina Rueda
Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data
title Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data
title_full Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data
title_fullStr Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data
title_full_unstemmed Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data
title_short Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data
title_sort tools for evolutionary and genetic analysis (tega): a new platform for the management of molecular and environmental data
topic Evolutionary Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7263200/
https://www.ncbi.nlm.nih.gov/pubmed/32478790
http://dx.doi.org/10.1590/1678-4685-GMB-2018-0272
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