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Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data
Population genetics studies the distributions and changes in population allele frequencies in response to processes, such as mutation, natural selection, gene flow, and genetic drift. Researchers daily manage genetic, biological, and environmental data of the samples, storing them in text files or s...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Sociedade Brasileira de Genética
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7263200/ https://www.ncbi.nlm.nih.gov/pubmed/32478790 http://dx.doi.org/10.1590/1678-4685-GMB-2018-0272 |
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author | Elias, Dario Ezequiel Rueda, Eva Carolina Rueda |
author_facet | Elias, Dario Ezequiel Rueda, Eva Carolina Rueda |
author_sort | Elias, Dario Ezequiel |
collection | PubMed |
description | Population genetics studies the distributions and changes in population allele frequencies in response to processes, such as mutation, natural selection, gene flow, and genetic drift. Researchers daily manage genetic, biological, and environmental data of the samples, storing them in text files or spreadsheets, which makes it difficult to maintain consistency and traceability. Here we present TEGA, a WEB-based stand-alone software developed for the easy analysis and management of population genetics data. It was designed to: 1) facilitate data management, 2) provide a way to execute the analysis procedures, and 3) supply a means to publish data, procedures, and results. TEGA is distributed under the GNU AGPL v3 license. The documentation, source code, and screenshots are available at https://github.com/darioelias/TEGA. In addition, we present Rabid Fish, the first implementation of TEGA in the Genetics Labortory of the Faculty of Humanities and Sciences at the National University of the Litoral, where research focuses on population genetics studies applied to non-model organisms. |
format | Online Article Text |
id | pubmed-7263200 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Sociedade Brasileira de Genética |
record_format | MEDLINE/PubMed |
spelling | pubmed-72632002020-06-10 Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data Elias, Dario Ezequiel Rueda, Eva Carolina Rueda Genet Mol Biol Evolutionary Genetics Population genetics studies the distributions and changes in population allele frequencies in response to processes, such as mutation, natural selection, gene flow, and genetic drift. Researchers daily manage genetic, biological, and environmental data of the samples, storing them in text files or spreadsheets, which makes it difficult to maintain consistency and traceability. Here we present TEGA, a WEB-based stand-alone software developed for the easy analysis and management of population genetics data. It was designed to: 1) facilitate data management, 2) provide a way to execute the analysis procedures, and 3) supply a means to publish data, procedures, and results. TEGA is distributed under the GNU AGPL v3 license. The documentation, source code, and screenshots are available at https://github.com/darioelias/TEGA. In addition, we present Rabid Fish, the first implementation of TEGA in the Genetics Labortory of the Faculty of Humanities and Sciences at the National University of the Litoral, where research focuses on population genetics studies applied to non-model organisms. Sociedade Brasileira de Genética 2020-05-29 /pmc/articles/PMC7263200/ /pubmed/32478790 http://dx.doi.org/10.1590/1678-4685-GMB-2018-0272 Text en https://creativecommons.org/licenses/by/4.0/ License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License (type CC-BY), which permits unrestricted use, distribution and reproduction in any medium, provided the original article is properly cited. |
spellingShingle | Evolutionary Genetics Elias, Dario Ezequiel Rueda, Eva Carolina Rueda Tools for Evolutionary and Genetic Analysis (TEGA): A new platform for the management of molecular and environmental data |
title | Tools for Evolutionary and Genetic Analysis (TEGA): A new platform
for the management of molecular and environmental data |
title_full | Tools for Evolutionary and Genetic Analysis (TEGA): A new platform
for the management of molecular and environmental data |
title_fullStr | Tools for Evolutionary and Genetic Analysis (TEGA): A new platform
for the management of molecular and environmental data |
title_full_unstemmed | Tools for Evolutionary and Genetic Analysis (TEGA): A new platform
for the management of molecular and environmental data |
title_short | Tools for Evolutionary and Genetic Analysis (TEGA): A new platform
for the management of molecular and environmental data |
title_sort | tools for evolutionary and genetic analysis (tega): a new platform
for the management of molecular and environmental data |
topic | Evolutionary Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7263200/ https://www.ncbi.nlm.nih.gov/pubmed/32478790 http://dx.doi.org/10.1590/1678-4685-GMB-2018-0272 |
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