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Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus
Real-time PCR (qPCR) is a useful and robust method of quantifying gene expression, provided that suitable reference genes are used to normalize the data. To date, suitable reference genes have not been validated for tomato gene expression changes in response to Tomato curly stunt virus (ToCSV). RT-q...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7264493/ https://www.ncbi.nlm.nih.gov/pubmed/32509939 http://dx.doi.org/10.1016/j.dib.2020.105750 |
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author | Bokhale, Mamokete Mwaba, Imanu Allie, Farhahna |
author_facet | Bokhale, Mamokete Mwaba, Imanu Allie, Farhahna |
author_sort | Bokhale, Mamokete |
collection | PubMed |
description | Real-time PCR (qPCR) is a useful and robust method of quantifying gene expression, provided that suitable reference genes are used to normalize the data. To date, suitable reference genes have not been validated for tomato gene expression changes in response to Tomato curly stunt virus (ToCSV). RT-qPCR was conducted on resistent (R) and susceptible (S) tomato leave tissue infected with ToCSV at 35 days post infection. Ten candidate reference genes were selected and validated using SYBR green. Here, we report a set of primers designed for the ten candidate genes and the data for the melt curve analysis and standard curves generated for each candidate reference gene. This data provides a useful resourse in reference gene selection for future use in the normalization of qPCR data investigating tomato-virus interactions. To our knowledge, this data provides the first selection and testing of candidate reference genes in a tomato-ToCSV pathosystem. |
format | Online Article Text |
id | pubmed-7264493 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-72644932020-06-05 Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus Bokhale, Mamokete Mwaba, Imanu Allie, Farhahna Data Brief Agricultural and Biological Science Real-time PCR (qPCR) is a useful and robust method of quantifying gene expression, provided that suitable reference genes are used to normalize the data. To date, suitable reference genes have not been validated for tomato gene expression changes in response to Tomato curly stunt virus (ToCSV). RT-qPCR was conducted on resistent (R) and susceptible (S) tomato leave tissue infected with ToCSV at 35 days post infection. Ten candidate reference genes were selected and validated using SYBR green. Here, we report a set of primers designed for the ten candidate genes and the data for the melt curve analysis and standard curves generated for each candidate reference gene. This data provides a useful resourse in reference gene selection for future use in the normalization of qPCR data investigating tomato-virus interactions. To our knowledge, this data provides the first selection and testing of candidate reference genes in a tomato-ToCSV pathosystem. Elsevier 2020-05-21 /pmc/articles/PMC7264493/ /pubmed/32509939 http://dx.doi.org/10.1016/j.dib.2020.105750 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Bokhale, Mamokete Mwaba, Imanu Allie, Farhahna Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus |
title | Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus |
title_full | Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus |
title_fullStr | Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus |
title_full_unstemmed | Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus |
title_short | Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus |
title_sort | real-time pcr data for reference candidate gene selection in tomato infected with tomato curly stunt virus |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7264493/ https://www.ncbi.nlm.nih.gov/pubmed/32509939 http://dx.doi.org/10.1016/j.dib.2020.105750 |
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