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Interpretable factor models of single-cell RNA-seq via variational autoencoders

MOTIVATION: Single-cell RNA-seq makes possible the investigation of variability in gene expression among cells, and dependence of variation on cell type. Statistical inference methods for such analyses must be scalable, and ideally interpretable. RESULTS: We present an approach based on a modificati...

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Detalles Bibliográficos
Autores principales: Svensson, Valentine, Gayoso, Adam, Yosef, Nir, Pachter, Lior
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7267837/
https://www.ncbi.nlm.nih.gov/pubmed/32176273
http://dx.doi.org/10.1093/bioinformatics/btaa169