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Automatic kernel counting on maize ear using RGB images

BACKGROUND: The number of kernels per ear is one of the major agronomic yield indicators for maize. Manual assessment of kernel traits can be time consuming and laborious. Moreover, manually acquired data can be influenced by subjective bias of the observer. Existing methods for counting of kernel n...

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Autores principales: Wu, Di, Cai, Zhen, Han, Jiwan, Qin, Huawei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7268725/
https://www.ncbi.nlm.nih.gov/pubmed/32518581
http://dx.doi.org/10.1186/s13007-020-00619-z
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author Wu, Di
Cai, Zhen
Han, Jiwan
Qin, Huawei
author_facet Wu, Di
Cai, Zhen
Han, Jiwan
Qin, Huawei
author_sort Wu, Di
collection PubMed
description BACKGROUND: The number of kernels per ear is one of the major agronomic yield indicators for maize. Manual assessment of kernel traits can be time consuming and laborious. Moreover, manually acquired data can be influenced by subjective bias of the observer. Existing methods for counting of kernel number are often unstable and costly. Machine vision technology allows objective extraction of features from image sensor data, offering high-throughput and low-cost advantages. RESULTS: Here, we propose an automatic kernel recognition method which has been applied to count the kernel number based on digital colour photos of the maize ears. Images were acquired under both LED diffuse (indoors) and natural light (outdoor) conditions. Field trials were carried out at two sites in China using 8 maize varieties. This method comprises five steps: (1) a Gaussian Pyramid for image compression to improve the processing efficiency, (2) separating the maize fruit from the background by Mean Shift Filtering algorithm, (3) a Colour Deconvolution (CD) algorithm to enhance the kernel edges, (4) segmentation of kernel zones using a local adaptive threshold, (5) an improved Find-Local-Maxima to recognize the local grayscale peaks and determine the maize kernel number within the image. The results showed good agreement (> 93%) in terms of accuracy and precision between ground truth (manual counting) and the image-based counting. CONCLUSIONS: The proposed algorithm has robust and superior performance in maize ear kernel counting under various illumination conditions. In addition, the approach is highly-efficient and low-cost. The performance of this method makes it applicable and satisfactory for real-world breeding programs.
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spelling pubmed-72687252020-06-08 Automatic kernel counting on maize ear using RGB images Wu, Di Cai, Zhen Han, Jiwan Qin, Huawei Plant Methods Methodology BACKGROUND: The number of kernels per ear is one of the major agronomic yield indicators for maize. Manual assessment of kernel traits can be time consuming and laborious. Moreover, manually acquired data can be influenced by subjective bias of the observer. Existing methods for counting of kernel number are often unstable and costly. Machine vision technology allows objective extraction of features from image sensor data, offering high-throughput and low-cost advantages. RESULTS: Here, we propose an automatic kernel recognition method which has been applied to count the kernel number based on digital colour photos of the maize ears. Images were acquired under both LED diffuse (indoors) and natural light (outdoor) conditions. Field trials were carried out at two sites in China using 8 maize varieties. This method comprises five steps: (1) a Gaussian Pyramid for image compression to improve the processing efficiency, (2) separating the maize fruit from the background by Mean Shift Filtering algorithm, (3) a Colour Deconvolution (CD) algorithm to enhance the kernel edges, (4) segmentation of kernel zones using a local adaptive threshold, (5) an improved Find-Local-Maxima to recognize the local grayscale peaks and determine the maize kernel number within the image. The results showed good agreement (> 93%) in terms of accuracy and precision between ground truth (manual counting) and the image-based counting. CONCLUSIONS: The proposed algorithm has robust and superior performance in maize ear kernel counting under various illumination conditions. In addition, the approach is highly-efficient and low-cost. The performance of this method makes it applicable and satisfactory for real-world breeding programs. BioMed Central 2020-06-01 /pmc/articles/PMC7268725/ /pubmed/32518581 http://dx.doi.org/10.1186/s13007-020-00619-z Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Methodology
Wu, Di
Cai, Zhen
Han, Jiwan
Qin, Huawei
Automatic kernel counting on maize ear using RGB images
title Automatic kernel counting on maize ear using RGB images
title_full Automatic kernel counting on maize ear using RGB images
title_fullStr Automatic kernel counting on maize ear using RGB images
title_full_unstemmed Automatic kernel counting on maize ear using RGB images
title_short Automatic kernel counting on maize ear using RGB images
title_sort automatic kernel counting on maize ear using rgb images
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7268725/
https://www.ncbi.nlm.nih.gov/pubmed/32518581
http://dx.doi.org/10.1186/s13007-020-00619-z
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