Cargando…

The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis

Mediator 12 (MED12) and MED13 are components of the Mediator multi-protein complex, that facilitates the initial steps of gene transcription. Here, in an Arabidopsis mutant screen, we identify MED12 and MED13 as positive gene regulators, both of which contribute broadly to morc1 de-repressed gene ex...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Qikun, Bischof, Sylvain, Harris, C. Jake, Zhong, Zhenhui, Zhan, Lingyu, Nguyen, Calvin, Rashoff, Andrew, Barshop, William D., Sun, Fei, Feng, Suhua, Potok, Magdalena, Gallego-Bartolome, Javier, Zhai, Jixian, Wohlschlegel, James A., Carey, Michael F., Long, Jeffrey A., Jacobsen, Steven E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7271234/
https://www.ncbi.nlm.nih.gov/pubmed/32493925
http://dx.doi.org/10.1038/s41467-020-16651-5
_version_ 1783542054362546176
author Liu, Qikun
Bischof, Sylvain
Harris, C. Jake
Zhong, Zhenhui
Zhan, Lingyu
Nguyen, Calvin
Rashoff, Andrew
Barshop, William D.
Sun, Fei
Feng, Suhua
Potok, Magdalena
Gallego-Bartolome, Javier
Zhai, Jixian
Wohlschlegel, James A.
Carey, Michael F.
Long, Jeffrey A.
Jacobsen, Steven E.
author_facet Liu, Qikun
Bischof, Sylvain
Harris, C. Jake
Zhong, Zhenhui
Zhan, Lingyu
Nguyen, Calvin
Rashoff, Andrew
Barshop, William D.
Sun, Fei
Feng, Suhua
Potok, Magdalena
Gallego-Bartolome, Javier
Zhai, Jixian
Wohlschlegel, James A.
Carey, Michael F.
Long, Jeffrey A.
Jacobsen, Steven E.
author_sort Liu, Qikun
collection PubMed
description Mediator 12 (MED12) and MED13 are components of the Mediator multi-protein complex, that facilitates the initial steps of gene transcription. Here, in an Arabidopsis mutant screen, we identify MED12 and MED13 as positive gene regulators, both of which contribute broadly to morc1 de-repressed gene expression. Both MED12 and MED13 are preferentially required for the expression of genes depleted in active chromatin marks, a chromatin signature shared with morc1 re-activated loci. We further discover that MED12 tends to interact with genes that are responsive to environmental stimuli, including light and radiation. We demonstrate that light-induced transient gene expression depends on MED12, and is accompanied by a concomitant increase in MED12 enrichment during induction. In contrast, the steady-state expression level of these genes show little dependence on MED12, suggesting that MED12 is primarily required to aid the expression of genes in transition from less-active to more active states.
format Online
Article
Text
id pubmed-7271234
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-72712342020-06-15 The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis Liu, Qikun Bischof, Sylvain Harris, C. Jake Zhong, Zhenhui Zhan, Lingyu Nguyen, Calvin Rashoff, Andrew Barshop, William D. Sun, Fei Feng, Suhua Potok, Magdalena Gallego-Bartolome, Javier Zhai, Jixian Wohlschlegel, James A. Carey, Michael F. Long, Jeffrey A. Jacobsen, Steven E. Nat Commun Article Mediator 12 (MED12) and MED13 are components of the Mediator multi-protein complex, that facilitates the initial steps of gene transcription. Here, in an Arabidopsis mutant screen, we identify MED12 and MED13 as positive gene regulators, both of which contribute broadly to morc1 de-repressed gene expression. Both MED12 and MED13 are preferentially required for the expression of genes depleted in active chromatin marks, a chromatin signature shared with morc1 re-activated loci. We further discover that MED12 tends to interact with genes that are responsive to environmental stimuli, including light and radiation. We demonstrate that light-induced transient gene expression depends on MED12, and is accompanied by a concomitant increase in MED12 enrichment during induction. In contrast, the steady-state expression level of these genes show little dependence on MED12, suggesting that MED12 is primarily required to aid the expression of genes in transition from less-active to more active states. Nature Publishing Group UK 2020-06-03 /pmc/articles/PMC7271234/ /pubmed/32493925 http://dx.doi.org/10.1038/s41467-020-16651-5 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liu, Qikun
Bischof, Sylvain
Harris, C. Jake
Zhong, Zhenhui
Zhan, Lingyu
Nguyen, Calvin
Rashoff, Andrew
Barshop, William D.
Sun, Fei
Feng, Suhua
Potok, Magdalena
Gallego-Bartolome, Javier
Zhai, Jixian
Wohlschlegel, James A.
Carey, Michael F.
Long, Jeffrey A.
Jacobsen, Steven E.
The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis
title The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis
title_full The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis
title_fullStr The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis
title_full_unstemmed The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis
title_short The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis
title_sort characterization of mediator 12 and 13 as conditional positive gene regulators in arabidopsis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7271234/
https://www.ncbi.nlm.nih.gov/pubmed/32493925
http://dx.doi.org/10.1038/s41467-020-16651-5
work_keys_str_mv AT liuqikun thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT bischofsylvain thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT harriscjake thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT zhongzhenhui thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT zhanlingyu thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT nguyencalvin thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT rashoffandrew thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT barshopwilliamd thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT sunfei thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT fengsuhua thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT potokmagdalena thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT gallegobartolomejavier thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT zhaijixian thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT wohlschlegeljamesa thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT careymichaelf thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT longjeffreya thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT jacobsenstevene thecharacterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT liuqikun characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT bischofsylvain characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT harriscjake characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT zhongzhenhui characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT zhanlingyu characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT nguyencalvin characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT rashoffandrew characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT barshopwilliamd characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT sunfei characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT fengsuhua characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT potokmagdalena characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT gallegobartolomejavier characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT zhaijixian characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT wohlschlegeljamesa characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT careymichaelf characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT longjeffreya characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis
AT jacobsenstevene characterizationofmediator12and13asconditionalpositivegeneregulatorsinarabidopsis