Cargando…

Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival

IMPORTANCE: There is a lack of studies exploring the performance of a deep learning survival neural network in non–small cell lung cancer (NSCLC). OBJECTIVES: To compare the performances of DeepSurv, a deep learning survival neural network with a tumor, node, and metastasis staging system in the pre...

Descripción completa

Detalles Bibliográficos
Autores principales: She, Yunlang, Jin, Zhuochen, Wu, Junqi, Deng, Jiajun, Zhang, Lei, Su, Hang, Jiang, Gening, Liu, Haipeng, Xie, Dong, Cao, Nan, Ren, Yijiu, Chen, Chang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Association 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7272121/
https://www.ncbi.nlm.nih.gov/pubmed/32492161
http://dx.doi.org/10.1001/jamanetworkopen.2020.5842
_version_ 1783542202445594624
author She, Yunlang
Jin, Zhuochen
Wu, Junqi
Deng, Jiajun
Zhang, Lei
Su, Hang
Jiang, Gening
Liu, Haipeng
Xie, Dong
Cao, Nan
Ren, Yijiu
Chen, Chang
author_facet She, Yunlang
Jin, Zhuochen
Wu, Junqi
Deng, Jiajun
Zhang, Lei
Su, Hang
Jiang, Gening
Liu, Haipeng
Xie, Dong
Cao, Nan
Ren, Yijiu
Chen, Chang
author_sort She, Yunlang
collection PubMed
description IMPORTANCE: There is a lack of studies exploring the performance of a deep learning survival neural network in non–small cell lung cancer (NSCLC). OBJECTIVES: To compare the performances of DeepSurv, a deep learning survival neural network with a tumor, node, and metastasis staging system in the prediction of survival and test the reliability of individual treatment recommendations provided by the deep learning survival neural network. DESIGN, SETTING, AND PARTICIPANTS: In this population-based cohort study, a deep learning–based algorithm was developed and validated using consecutive cases of newly diagnosed stages I to IV NSCLC between January 2010 and December 2015 in a Surveillance, Epidemiology, and End Results database. A total of 127 features, including patient characteristics, tumor stage, and treatment strategies, were assessed for analysis. The algorithm was externally validated on an independent test cohort, comprising 1182 patients with stage I to III NSCLC diagnosed between January 2009 and December 2013 in Shanghai Pulmonary Hospital. Analysis began January 2018 and ended June 2019. MAIN OUTCOMES AND MEASURES: The deep learning survival neural network model was compared with the tumor, node, and metastasis staging system for lung cancer–specific survival. The C statistic was used to assess the performance of models. A user-friendly interface was provided to facilitate the survival predictions and treatment recommendations of the deep learning survival neural network model. RESULTS: Of 17 322 patients with NSCLC included in the study, 13 361 (77.1%) were white and the median (interquartile range) age was 68 (61-74) years. The majority of tumors were stage I disease (10 273 [59.3%]) and adenocarcinoma (11 985 [69.2%]). The median (interquartile range) follow-up time was 24 (10-43) months. There were 3119 patients who had lung cancer–related death during the follow-up period. The deep learning survival neural network model showed more promising results in the prediction of lung cancer–specific survival than the tumor, node, and metastasis stage on the test data set (C statistic = 0.739 vs 0.706). The population who received the recommended treatments had superior survival rates than those who received treatments not recommended (hazard ratio, 2.99; 95% CI, 2.49-3.59; P < .001), which was verified by propensity score–matched groups. The deep learning survival neural network model visualization was realized by a user-friendly graphic interface. CONCLUSIONS AND RELEVANCE: The deep learning survival neural network model shows potential benefits in prognostic evaluation and treatment recommendation with respect to lung cancer–specific survival. This novel analytical approach may provide reliable individual survival information and treatment recommendations.
format Online
Article
Text
id pubmed-7272121
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Medical Association
record_format MEDLINE/PubMed
spelling pubmed-72721212020-06-15 Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival She, Yunlang Jin, Zhuochen Wu, Junqi Deng, Jiajun Zhang, Lei Su, Hang Jiang, Gening Liu, Haipeng Xie, Dong Cao, Nan Ren, Yijiu Chen, Chang JAMA Netw Open Original Investigation IMPORTANCE: There is a lack of studies exploring the performance of a deep learning survival neural network in non–small cell lung cancer (NSCLC). OBJECTIVES: To compare the performances of DeepSurv, a deep learning survival neural network with a tumor, node, and metastasis staging system in the prediction of survival and test the reliability of individual treatment recommendations provided by the deep learning survival neural network. DESIGN, SETTING, AND PARTICIPANTS: In this population-based cohort study, a deep learning–based algorithm was developed and validated using consecutive cases of newly diagnosed stages I to IV NSCLC between January 2010 and December 2015 in a Surveillance, Epidemiology, and End Results database. A total of 127 features, including patient characteristics, tumor stage, and treatment strategies, were assessed for analysis. The algorithm was externally validated on an independent test cohort, comprising 1182 patients with stage I to III NSCLC diagnosed between January 2009 and December 2013 in Shanghai Pulmonary Hospital. Analysis began January 2018 and ended June 2019. MAIN OUTCOMES AND MEASURES: The deep learning survival neural network model was compared with the tumor, node, and metastasis staging system for lung cancer–specific survival. The C statistic was used to assess the performance of models. A user-friendly interface was provided to facilitate the survival predictions and treatment recommendations of the deep learning survival neural network model. RESULTS: Of 17 322 patients with NSCLC included in the study, 13 361 (77.1%) were white and the median (interquartile range) age was 68 (61-74) years. The majority of tumors were stage I disease (10 273 [59.3%]) and adenocarcinoma (11 985 [69.2%]). The median (interquartile range) follow-up time was 24 (10-43) months. There were 3119 patients who had lung cancer–related death during the follow-up period. The deep learning survival neural network model showed more promising results in the prediction of lung cancer–specific survival than the tumor, node, and metastasis stage on the test data set (C statistic = 0.739 vs 0.706). The population who received the recommended treatments had superior survival rates than those who received treatments not recommended (hazard ratio, 2.99; 95% CI, 2.49-3.59; P < .001), which was verified by propensity score–matched groups. The deep learning survival neural network model visualization was realized by a user-friendly graphic interface. CONCLUSIONS AND RELEVANCE: The deep learning survival neural network model shows potential benefits in prognostic evaluation and treatment recommendation with respect to lung cancer–specific survival. This novel analytical approach may provide reliable individual survival information and treatment recommendations. American Medical Association 2020-06-03 /pmc/articles/PMC7272121/ /pubmed/32492161 http://dx.doi.org/10.1001/jamanetworkopen.2020.5842 Text en Copyright 2020 She Y et al. JAMA Network Open. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the CC-BY License.
spellingShingle Original Investigation
She, Yunlang
Jin, Zhuochen
Wu, Junqi
Deng, Jiajun
Zhang, Lei
Su, Hang
Jiang, Gening
Liu, Haipeng
Xie, Dong
Cao, Nan
Ren, Yijiu
Chen, Chang
Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival
title Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival
title_full Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival
title_fullStr Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival
title_full_unstemmed Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival
title_short Development and Validation of a Deep Learning Model for Non–Small Cell Lung Cancer Survival
title_sort development and validation of a deep learning model for non–small cell lung cancer survival
topic Original Investigation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7272121/
https://www.ncbi.nlm.nih.gov/pubmed/32492161
http://dx.doi.org/10.1001/jamanetworkopen.2020.5842
work_keys_str_mv AT sheyunlang developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT jinzhuochen developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT wujunqi developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT dengjiajun developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT zhanglei developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT suhang developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT jianggening developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT liuhaipeng developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT xiedong developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT caonan developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT renyijiu developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival
AT chenchang developmentandvalidationofadeeplearningmodelfornonsmallcelllungcancersurvival