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In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein
Colaphellus bowringi Baly mainly damages cruciferous vegetables, leading to huge economic losses. The secretory insecticidal protein (Sip) of Bacillus thuringiensis (Bt) has high insecticidal activity against C. bowringi Baly. The tertiary structure of Sip1Aa protein was analyzed by homologous model...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273025/ https://www.ncbi.nlm.nih.gov/pubmed/32547509 http://dx.doi.org/10.3389/fmicb.2020.00984 |
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author | Wang, Jing Ding, Ming-Yue Wang, Jian Liu, Rong-Mei Li, Hai-Tao Gao, Ji-Guo |
author_facet | Wang, Jing Ding, Ming-Yue Wang, Jian Liu, Rong-Mei Li, Hai-Tao Gao, Ji-Guo |
author_sort | Wang, Jing |
collection | PubMed |
description | Colaphellus bowringi Baly mainly damages cruciferous vegetables, leading to huge economic losses. The secretory insecticidal protein (Sip) of Bacillus thuringiensis (Bt) has high insecticidal activity against C. bowringi Baly. The tertiary structure of Sip1Aa protein was analyzed by homologous modeling and other bioinformatics methods to predict the conserved domain of Sip1Aa protein. Acidic and basic amino acids in the conserved domain were selected, and alanine was used to replace these amino acids by site-directed mutation. The difference between the insecticidal activities of mutant protein and Sip1Aa protein was analyzed. The insecticidal activities of H99A, K109A, K128A, and E130A against C. bowringi Baly were significantly increased, among which that of K128A was the most obviously changed, and the LC(50) value was decreased by about 10 times compared with that of Sip1Aa protein. The LC(50) value of mutant E130A was 0.286 μg/mL, which was about six times less than that of Sip1Aa. K128 and E130 were both in the β9–β10 loop. The toxicity of D290A, H242A, and H303A to C. bowringi Baly was significantly reduced, and their LC(50) value increased by about six, eight, and three times compared with that of Sip1Aa protein, respectively. This study showed that acidic and basic amino acid residues played a certain role in the toxicity of Sip1Aa protein, and the loss of side chains in key residues had a significant impact on the insecticidal activity of the protein. This study provides the theoretical basis for revealing the relationship between the structure and function of Sip1Aa protein and also provides a new method for the subsequent study of sip gene. |
format | Online Article Text |
id | pubmed-7273025 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72730252020-06-15 In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein Wang, Jing Ding, Ming-Yue Wang, Jian Liu, Rong-Mei Li, Hai-Tao Gao, Ji-Guo Front Microbiol Microbiology Colaphellus bowringi Baly mainly damages cruciferous vegetables, leading to huge economic losses. The secretory insecticidal protein (Sip) of Bacillus thuringiensis (Bt) has high insecticidal activity against C. bowringi Baly. The tertiary structure of Sip1Aa protein was analyzed by homologous modeling and other bioinformatics methods to predict the conserved domain of Sip1Aa protein. Acidic and basic amino acids in the conserved domain were selected, and alanine was used to replace these amino acids by site-directed mutation. The difference between the insecticidal activities of mutant protein and Sip1Aa protein was analyzed. The insecticidal activities of H99A, K109A, K128A, and E130A against C. bowringi Baly were significantly increased, among which that of K128A was the most obviously changed, and the LC(50) value was decreased by about 10 times compared with that of Sip1Aa protein. The LC(50) value of mutant E130A was 0.286 μg/mL, which was about six times less than that of Sip1Aa. K128 and E130 were both in the β9–β10 loop. The toxicity of D290A, H242A, and H303A to C. bowringi Baly was significantly reduced, and their LC(50) value increased by about six, eight, and three times compared with that of Sip1Aa protein, respectively. This study showed that acidic and basic amino acid residues played a certain role in the toxicity of Sip1Aa protein, and the loss of side chains in key residues had a significant impact on the insecticidal activity of the protein. This study provides the theoretical basis for revealing the relationship between the structure and function of Sip1Aa protein and also provides a new method for the subsequent study of sip gene. Frontiers Media S.A. 2020-05-29 /pmc/articles/PMC7273025/ /pubmed/32547509 http://dx.doi.org/10.3389/fmicb.2020.00984 Text en Copyright © 2020 Wang, Ding, Wang, Liu, Li and Gao. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Wang, Jing Ding, Ming-Yue Wang, Jian Liu, Rong-Mei Li, Hai-Tao Gao, Ji-Guo In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein |
title | In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein |
title_full | In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein |
title_fullStr | In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein |
title_full_unstemmed | In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein |
title_short | In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein |
title_sort | in silico structure–based investigation of key residues of insecticidal activity of sip1aa protein |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273025/ https://www.ncbi.nlm.nih.gov/pubmed/32547509 http://dx.doi.org/10.3389/fmicb.2020.00984 |
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