RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum

Root-associated genes play an important role in plants. Despite the fact that there have been studies on root biology, information on genes that are specifically expressed or upregulated in roots is poorly collected. There exist very few databases dedicated to genes and promoters associated with roo...

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Detalles Bibliográficos
Autores principales: Moisseyev, Gleb, Park, Kiyoul, Cui, Alix, Freitas, Daniel, Rajagopal, Divith, Konda, Anji Reddy, Martin-Olenski, Madalayne, Mcham, Mackenzie, Liu, Kan, Du, Qian, Schnable, James C, Moriyama, Etsuko N, Cahoon, Edgar B, Zhang, Chi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Original Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273057/
https://www.ncbi.nlm.nih.gov/pubmed/32500918
http://dx.doi.org/10.1093/database/baaa038
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author Moisseyev, Gleb
Park, Kiyoul
Cui, Alix
Freitas, Daniel
Rajagopal, Divith
Konda, Anji Reddy
Martin-Olenski, Madalayne
Mcham, Mackenzie
Liu, Kan
Du, Qian
Schnable, James C
Moriyama, Etsuko N
Cahoon, Edgar B
Zhang, Chi
author_facet Moisseyev, Gleb
Park, Kiyoul
Cui, Alix
Freitas, Daniel
Rajagopal, Divith
Konda, Anji Reddy
Martin-Olenski, Madalayne
Mcham, Mackenzie
Liu, Kan
Du, Qian
Schnable, James C
Moriyama, Etsuko N
Cahoon, Edgar B
Zhang, Chi
author_sort Moisseyev, Gleb
collection PubMed
description Root-associated genes play an important role in plants. Despite the fact that there have been studies on root biology, information on genes that are specifically expressed or upregulated in roots is poorly collected. There exist very few databases dedicated to genes and promoters associated with root biology, preventing effective root-related studies. Therefore, we analyzed multiple types of omics data to identify root-associated genes in maize, soybean, and sorghum and constructed a comprehensive online database of these genes and their promoter sequences. This database creates a pivotal platform capable of stimulating and facilitating further studies on manipulating root growth and development.
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spelling pubmed-72730572020-06-10 RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum Moisseyev, Gleb Park, Kiyoul Cui, Alix Freitas, Daniel Rajagopal, Divith Konda, Anji Reddy Martin-Olenski, Madalayne Mcham, Mackenzie Liu, Kan Du, Qian Schnable, James C Moriyama, Etsuko N Cahoon, Edgar B Zhang, Chi Database (Oxford) Original Article Root-associated genes play an important role in plants. Despite the fact that there have been studies on root biology, information on genes that are specifically expressed or upregulated in roots is poorly collected. There exist very few databases dedicated to genes and promoters associated with root biology, preventing effective root-related studies. Therefore, we analyzed multiple types of omics data to identify root-associated genes in maize, soybean, and sorghum and constructed a comprehensive online database of these genes and their promoter sequences. This database creates a pivotal platform capable of stimulating and facilitating further studies on manipulating root growth and development. Oxford University Press 2020-06-05 /pmc/articles/PMC7273057/ /pubmed/32500918 http://dx.doi.org/10.1093/database/baaa038 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Moisseyev, Gleb
Park, Kiyoul
Cui, Alix
Freitas, Daniel
Rajagopal, Divith
Konda, Anji Reddy
Martin-Olenski, Madalayne
Mcham, Mackenzie
Liu, Kan
Du, Qian
Schnable, James C
Moriyama, Etsuko N
Cahoon, Edgar B
Zhang, Chi
RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum
title RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum
title_full RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum
title_fullStr RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum
title_full_unstemmed RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum
title_short RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum
title_sort rgpdb: database of root-associated genes and promoters in maize, soybean, and sorghum
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273057/
https://www.ncbi.nlm.nih.gov/pubmed/32500918
http://dx.doi.org/10.1093/database/baaa038
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