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Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)

1-(Chloro­meth­yl)-3-nitro­benzene, C(7)H(6)NClO(2), and 1-(bromo­meth­yl)-3-nitro­benzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomo...

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Detalles Bibliográficos
Autores principales: Mroz, Damian, Wang, Ruimin, Englert, Ulli, Dronskowski, Richard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273188/
https://www.ncbi.nlm.nih.gov/pubmed/32499457
http://dx.doi.org/10.1107/S2053229620006221
Descripción
Sumario:1-(Chloro­meth­yl)-3-nitro­benzene, C(7)H(6)NClO(2), and 1-(bromo­meth­yl)-3-nitro­benzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomorphous, and theory predicted similar ADPs for both. In-house diffraction experiments with Mo Kα radiation were in apparent contradiction to this theoretical result, with experimentally observed ADPs significantly larger for the bromo derivative. In contrast, the experimental and theoretical ADPs for the lighter congener matched reasonably well. As all usual quality indicators for both sets of experimental data were satisfactory, complementary diffraction experiments were performed at a synchrotron beamline with shorter wavelength. Refinements based on these intensity data gave very similar ADPs for both compounds and were thus in agreement with the earlier in-house results for the chloro derivative and the predictions of theory. We speculate that strong absorption by the heavy halogen may be the reason for the observed discrepancy.