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Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br)
1-(Chloromethyl)-3-nitrobenzene, C(7)H(6)NClO(2), and 1-(bromomethyl)-3-nitrobenzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomo...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273188/ https://www.ncbi.nlm.nih.gov/pubmed/32499457 http://dx.doi.org/10.1107/S2053229620006221 |
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author | Mroz, Damian Wang, Ruimin Englert, Ulli Dronskowski, Richard |
author_facet | Mroz, Damian Wang, Ruimin Englert, Ulli Dronskowski, Richard |
author_sort | Mroz, Damian |
collection | PubMed |
description | 1-(Chloromethyl)-3-nitrobenzene, C(7)H(6)NClO(2), and 1-(bromomethyl)-3-nitrobenzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomorphous, and theory predicted similar ADPs for both. In-house diffraction experiments with Mo Kα radiation were in apparent contradiction to this theoretical result, with experimentally observed ADPs significantly larger for the bromo derivative. In contrast, the experimental and theoretical ADPs for the lighter congener matched reasonably well. As all usual quality indicators for both sets of experimental data were satisfactory, complementary diffraction experiments were performed at a synchrotron beamline with shorter wavelength. Refinements based on these intensity data gave very similar ADPs for both compounds and were thus in agreement with the earlier in-house results for the chloro derivative and the predictions of theory. We speculate that strong absorption by the heavy halogen may be the reason for the observed discrepancy. |
format | Online Article Text |
id | pubmed-7273188 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-72731882020-06-09 Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br) Mroz, Damian Wang, Ruimin Englert, Ulli Dronskowski, Richard Acta Crystallogr C Struct Chem Research Papers 1-(Chloromethyl)-3-nitrobenzene, C(7)H(6)NClO(2), and 1-(bromomethyl)-3-nitrobenzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomorphous, and theory predicted similar ADPs for both. In-house diffraction experiments with Mo Kα radiation were in apparent contradiction to this theoretical result, with experimentally observed ADPs significantly larger for the bromo derivative. In contrast, the experimental and theoretical ADPs for the lighter congener matched reasonably well. As all usual quality indicators for both sets of experimental data were satisfactory, complementary diffraction experiments were performed at a synchrotron beamline with shorter wavelength. Refinements based on these intensity data gave very similar ADPs for both compounds and were thus in agreement with the earlier in-house results for the chloro derivative and the predictions of theory. We speculate that strong absorption by the heavy halogen may be the reason for the observed discrepancy. International Union of Crystallography 2020-05-20 /pmc/articles/PMC7273188/ /pubmed/32499457 http://dx.doi.org/10.1107/S2053229620006221 Text en © Mroz et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Mroz, Damian Wang, Ruimin Englert, Ulli Dronskowski, Richard Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br) |
title | Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br) |
title_full | Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br) |
title_fullStr | Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br) |
title_full_unstemmed | Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br) |
title_short | Can we trust the experiment? Anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = Cl or Br) |
title_sort | can we trust the experiment? anisotropic displacement parameters in 1-(halomethyl)-3-nitrobenzene (halogen = cl or br) |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273188/ https://www.ncbi.nlm.nih.gov/pubmed/32499457 http://dx.doi.org/10.1107/S2053229620006221 |
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