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Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)

1-(Chloro­meth­yl)-3-nitro­benzene, C(7)H(6)NClO(2), and 1-(bromo­meth­yl)-3-nitro­benzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomo...

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Autores principales: Mroz, Damian, Wang, Ruimin, Englert, Ulli, Dronskowski, Richard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273188/
https://www.ncbi.nlm.nih.gov/pubmed/32499457
http://dx.doi.org/10.1107/S2053229620006221
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author Mroz, Damian
Wang, Ruimin
Englert, Ulli
Dronskowski, Richard
author_facet Mroz, Damian
Wang, Ruimin
Englert, Ulli
Dronskowski, Richard
author_sort Mroz, Damian
collection PubMed
description 1-(Chloro­meth­yl)-3-nitro­benzene, C(7)H(6)NClO(2), and 1-(bromo­meth­yl)-3-nitro­benzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomorphous, and theory predicted similar ADPs for both. In-house diffraction experiments with Mo Kα radiation were in apparent contradiction to this theoretical result, with experimentally observed ADPs significantly larger for the bromo derivative. In contrast, the experimental and theoretical ADPs for the lighter congener matched reasonably well. As all usual quality indicators for both sets of experimental data were satisfactory, complementary diffraction experiments were performed at a synchrotron beamline with shorter wavelength. Refinements based on these intensity data gave very similar ADPs for both compounds and were thus in agreement with the earlier in-house results for the chloro derivative and the predictions of theory. We speculate that strong absorption by the heavy halogen may be the reason for the observed discrepancy.
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spelling pubmed-72731882020-06-09 Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br) Mroz, Damian Wang, Ruimin Englert, Ulli Dronskowski, Richard Acta Crystallogr C Struct Chem Research Papers 1-(Chloro­meth­yl)-3-nitro­benzene, C(7)H(6)NClO(2), and 1-(bromo­meth­yl)-3-nitro­benzene, C(7)H(6)NBrO(2), were chosen as test compounds for benchmarking anisotropic displacement parameters (ADPs) calculated from first principles in the harmonic approximation. Crystals of these compounds are isomorphous, and theory predicted similar ADPs for both. In-house diffraction experiments with Mo Kα radiation were in apparent contradiction to this theoretical result, with experimentally observed ADPs significantly larger for the bromo derivative. In contrast, the experimental and theoretical ADPs for the lighter congener matched reasonably well. As all usual quality indicators for both sets of experimental data were satisfactory, complementary diffraction experiments were performed at a synchrotron beamline with shorter wavelength. Refinements based on these intensity data gave very similar ADPs for both compounds and were thus in agreement with the earlier in-house results for the chloro derivative and the predictions of theory. We speculate that strong absorption by the heavy halogen may be the reason for the observed discrepancy. International Union of Crystallography 2020-05-20 /pmc/articles/PMC7273188/ /pubmed/32499457 http://dx.doi.org/10.1107/S2053229620006221 Text en © Mroz et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Papers
Mroz, Damian
Wang, Ruimin
Englert, Ulli
Dronskowski, Richard
Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)
title Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)
title_full Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)
title_fullStr Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)
title_full_unstemmed Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)
title_short Can we trust the experiment? Anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = Cl or Br)
title_sort can we trust the experiment? anisotropic dis­placement parameters in 1-(halometh­yl)-3-nitro­benzene (halogen = cl or br)
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273188/
https://www.ncbi.nlm.nih.gov/pubmed/32499457
http://dx.doi.org/10.1107/S2053229620006221
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