Cargando…

A collaborative online AI engine for CT-based COVID-19 diagnosis

Artificial intelligence can potentially provide a substantial role in streamlining chest computed tomography (CT) diagnosis of COVID-19 patients. However, several critical hurdles have impeded the development of robust AI model, which include deficiency, isolation, and heterogeneity of CT data gener...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Yongchao, Ma, Liya, Yang, Fan, Chen, Yanyan, Ma, Ke, Yang, Jiehua, Yang, Xian, Chen, Yaobing, Shu, Chang, Fan, Ziwei, Gan, Jiefeng, Zou, Xinyu, Huang, Renhao, Zhang, Changzheng, Liu, Xiaowu, Tu, Dandan, Xu, Chuou, Zhang, Wenqing, Yang, Dehua, Wang, Ming-Wei, Wang, Xi, Xie, Xiaoliang, Leng, Hongxiang, Holalkere, Nagaraj, Halin, Neil J., Kamel, Ihab Roushdy, Wu, Jia, Peng, Xuehua, Wang, Xiang, Shao, Jianbo, Mongkolwat, Pattanasak, Zhang, Jianjun, Rubin, Daniel L., Wang, Guoping, Zheng, Chuangsheng, Li, Zhen, Bai, Xiang, Xia, Tian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273252/
https://www.ncbi.nlm.nih.gov/pubmed/32511484
http://dx.doi.org/10.1101/2020.05.10.20096073
_version_ 1783542364875259904
author Xu, Yongchao
Ma, Liya
Yang, Fan
Chen, Yanyan
Ma, Ke
Yang, Jiehua
Yang, Xian
Chen, Yaobing
Shu, Chang
Fan, Ziwei
Gan, Jiefeng
Zou, Xinyu
Huang, Renhao
Zhang, Changzheng
Liu, Xiaowu
Tu, Dandan
Xu, Chuou
Zhang, Wenqing
Yang, Dehua
Wang, Ming-Wei
Wang, Xi
Xie, Xiaoliang
Leng, Hongxiang
Holalkere, Nagaraj
Halin, Neil J.
Kamel, Ihab Roushdy
Wu, Jia
Peng, Xuehua
Wang, Xiang
Shao, Jianbo
Mongkolwat, Pattanasak
Zhang, Jianjun
Rubin, Daniel L.
Wang, Guoping
Zheng, Chuangsheng
Li, Zhen
Bai, Xiang
Xia, Tian
author_facet Xu, Yongchao
Ma, Liya
Yang, Fan
Chen, Yanyan
Ma, Ke
Yang, Jiehua
Yang, Xian
Chen, Yaobing
Shu, Chang
Fan, Ziwei
Gan, Jiefeng
Zou, Xinyu
Huang, Renhao
Zhang, Changzheng
Liu, Xiaowu
Tu, Dandan
Xu, Chuou
Zhang, Wenqing
Yang, Dehua
Wang, Ming-Wei
Wang, Xi
Xie, Xiaoliang
Leng, Hongxiang
Holalkere, Nagaraj
Halin, Neil J.
Kamel, Ihab Roushdy
Wu, Jia
Peng, Xuehua
Wang, Xiang
Shao, Jianbo
Mongkolwat, Pattanasak
Zhang, Jianjun
Rubin, Daniel L.
Wang, Guoping
Zheng, Chuangsheng
Li, Zhen
Bai, Xiang
Xia, Tian
author_sort Xu, Yongchao
collection PubMed
description Artificial intelligence can potentially provide a substantial role in streamlining chest computed tomography (CT) diagnosis of COVID-19 patients. However, several critical hurdles have impeded the development of robust AI model, which include deficiency, isolation, and heterogeneity of CT data generated from diverse institutions. These bring about lack of generalization of AI model and therefore prevent it from applications in clinical practices. To overcome this, we proposed a federated learning-based Unified CT-COVID AI Diagnostic Initiative (UCADI, http://www.ai-ct-covid.team/), a decentralized architecture where the AI model is distributed to and executed at each host institution with the data sources or client ends for training and inferencing without sharing individual patient data. Specifically, we firstly developed an initial AI CT model based on data collected from three Tongji hospitals in Wuhan. After model evaluation, we found that the initial model can identify COVID from Tongji CT test data at near radiologist-level (97.5% sensitivity) but performed worse when it was tested on COVID cases from Wuhan Union Hospital (72% sensitivity), indicating a lack of model generalization. Next, we used the publicly available UCADI framework to build a federated model which integrated COVID CT cases from the Tongji hospitals and Wuhan Union hospital (WU) without transferring the WU data. The federated model not only performed similarly on Tongji test data but improved the detection sensitivity (98%) on WU test cases. The UCADI framework will allow participants worldwide to use and contribute to the model, to deliver a real-world, globally built and validated clinic CT-COVID AI tool. This effort directly supports the United Nations Sustainable Development Goals’ number 3, Good Health and Well-Being, and allows sharing and transferring of knowledge to fight this devastating disease around the world.
format Online
Article
Text
id pubmed-7273252
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Cold Spring Harbor Laboratory
record_format MEDLINE/PubMed
spelling pubmed-72732522020-06-07 A collaborative online AI engine for CT-based COVID-19 diagnosis Xu, Yongchao Ma, Liya Yang, Fan Chen, Yanyan Ma, Ke Yang, Jiehua Yang, Xian Chen, Yaobing Shu, Chang Fan, Ziwei Gan, Jiefeng Zou, Xinyu Huang, Renhao Zhang, Changzheng Liu, Xiaowu Tu, Dandan Xu, Chuou Zhang, Wenqing Yang, Dehua Wang, Ming-Wei Wang, Xi Xie, Xiaoliang Leng, Hongxiang Holalkere, Nagaraj Halin, Neil J. Kamel, Ihab Roushdy Wu, Jia Peng, Xuehua Wang, Xiang Shao, Jianbo Mongkolwat, Pattanasak Zhang, Jianjun Rubin, Daniel L. Wang, Guoping Zheng, Chuangsheng Li, Zhen Bai, Xiang Xia, Tian medRxiv Article Artificial intelligence can potentially provide a substantial role in streamlining chest computed tomography (CT) diagnosis of COVID-19 patients. However, several critical hurdles have impeded the development of robust AI model, which include deficiency, isolation, and heterogeneity of CT data generated from diverse institutions. These bring about lack of generalization of AI model and therefore prevent it from applications in clinical practices. To overcome this, we proposed a federated learning-based Unified CT-COVID AI Diagnostic Initiative (UCADI, http://www.ai-ct-covid.team/), a decentralized architecture where the AI model is distributed to and executed at each host institution with the data sources or client ends for training and inferencing without sharing individual patient data. Specifically, we firstly developed an initial AI CT model based on data collected from three Tongji hospitals in Wuhan. After model evaluation, we found that the initial model can identify COVID from Tongji CT test data at near radiologist-level (97.5% sensitivity) but performed worse when it was tested on COVID cases from Wuhan Union Hospital (72% sensitivity), indicating a lack of model generalization. Next, we used the publicly available UCADI framework to build a federated model which integrated COVID CT cases from the Tongji hospitals and Wuhan Union hospital (WU) without transferring the WU data. The federated model not only performed similarly on Tongji test data but improved the detection sensitivity (98%) on WU test cases. The UCADI framework will allow participants worldwide to use and contribute to the model, to deliver a real-world, globally built and validated clinic CT-COVID AI tool. This effort directly supports the United Nations Sustainable Development Goals’ number 3, Good Health and Well-Being, and allows sharing and transferring of knowledge to fight this devastating disease around the world. Cold Spring Harbor Laboratory 2020-05-19 /pmc/articles/PMC7273252/ /pubmed/32511484 http://dx.doi.org/10.1101/2020.05.10.20096073 Text en http://creativecommons.org/licenses/by-nc/4.0/It is made available under a CC-BY-NC 4.0 International license (http://creativecommons.org/licenses/by-nc/4.0/) .
spellingShingle Article
Xu, Yongchao
Ma, Liya
Yang, Fan
Chen, Yanyan
Ma, Ke
Yang, Jiehua
Yang, Xian
Chen, Yaobing
Shu, Chang
Fan, Ziwei
Gan, Jiefeng
Zou, Xinyu
Huang, Renhao
Zhang, Changzheng
Liu, Xiaowu
Tu, Dandan
Xu, Chuou
Zhang, Wenqing
Yang, Dehua
Wang, Ming-Wei
Wang, Xi
Xie, Xiaoliang
Leng, Hongxiang
Holalkere, Nagaraj
Halin, Neil J.
Kamel, Ihab Roushdy
Wu, Jia
Peng, Xuehua
Wang, Xiang
Shao, Jianbo
Mongkolwat, Pattanasak
Zhang, Jianjun
Rubin, Daniel L.
Wang, Guoping
Zheng, Chuangsheng
Li, Zhen
Bai, Xiang
Xia, Tian
A collaborative online AI engine for CT-based COVID-19 diagnosis
title A collaborative online AI engine for CT-based COVID-19 diagnosis
title_full A collaborative online AI engine for CT-based COVID-19 diagnosis
title_fullStr A collaborative online AI engine for CT-based COVID-19 diagnosis
title_full_unstemmed A collaborative online AI engine for CT-based COVID-19 diagnosis
title_short A collaborative online AI engine for CT-based COVID-19 diagnosis
title_sort collaborative online ai engine for ct-based covid-19 diagnosis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273252/
https://www.ncbi.nlm.nih.gov/pubmed/32511484
http://dx.doi.org/10.1101/2020.05.10.20096073
work_keys_str_mv AT xuyongchao acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT maliya acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangfan acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT chenyanyan acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT make acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangjiehua acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangxian acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT chenyaobing acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT shuchang acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT fanziwei acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT ganjiefeng acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT zouxinyu acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT huangrenhao acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhangchangzheng acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT liuxiaowu acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT tudandan acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT xuchuou acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhangwenqing acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangdehua acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangmingwei acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangxi acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT xiexiaoliang acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT lenghongxiang acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT holalkerenagaraj acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT halinneilj acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT kamelihabroushdy acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT wujia acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT pengxuehua acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangxiang acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT shaojianbo acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT mongkolwatpattanasak acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhangjianjun acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT rubindaniell acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangguoping acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhengchuangsheng acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT lizhen acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT baixiang acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT xiatian acollaborativeonlineaiengineforctbasedcovid19diagnosis
AT xuyongchao collaborativeonlineaiengineforctbasedcovid19diagnosis
AT maliya collaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangfan collaborativeonlineaiengineforctbasedcovid19diagnosis
AT chenyanyan collaborativeonlineaiengineforctbasedcovid19diagnosis
AT make collaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangjiehua collaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangxian collaborativeonlineaiengineforctbasedcovid19diagnosis
AT chenyaobing collaborativeonlineaiengineforctbasedcovid19diagnosis
AT shuchang collaborativeonlineaiengineforctbasedcovid19diagnosis
AT fanziwei collaborativeonlineaiengineforctbasedcovid19diagnosis
AT ganjiefeng collaborativeonlineaiengineforctbasedcovid19diagnosis
AT zouxinyu collaborativeonlineaiengineforctbasedcovid19diagnosis
AT huangrenhao collaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhangchangzheng collaborativeonlineaiengineforctbasedcovid19diagnosis
AT liuxiaowu collaborativeonlineaiengineforctbasedcovid19diagnosis
AT tudandan collaborativeonlineaiengineforctbasedcovid19diagnosis
AT xuchuou collaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhangwenqing collaborativeonlineaiengineforctbasedcovid19diagnosis
AT yangdehua collaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangmingwei collaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangxi collaborativeonlineaiengineforctbasedcovid19diagnosis
AT xiexiaoliang collaborativeonlineaiengineforctbasedcovid19diagnosis
AT lenghongxiang collaborativeonlineaiengineforctbasedcovid19diagnosis
AT holalkerenagaraj collaborativeonlineaiengineforctbasedcovid19diagnosis
AT halinneilj collaborativeonlineaiengineforctbasedcovid19diagnosis
AT kamelihabroushdy collaborativeonlineaiengineforctbasedcovid19diagnosis
AT wujia collaborativeonlineaiengineforctbasedcovid19diagnosis
AT pengxuehua collaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangxiang collaborativeonlineaiengineforctbasedcovid19diagnosis
AT shaojianbo collaborativeonlineaiengineforctbasedcovid19diagnosis
AT mongkolwatpattanasak collaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhangjianjun collaborativeonlineaiengineforctbasedcovid19diagnosis
AT rubindaniell collaborativeonlineaiengineforctbasedcovid19diagnosis
AT wangguoping collaborativeonlineaiengineforctbasedcovid19diagnosis
AT zhengchuangsheng collaborativeonlineaiengineforctbasedcovid19diagnosis
AT lizhen collaborativeonlineaiengineforctbasedcovid19diagnosis
AT baixiang collaborativeonlineaiengineforctbasedcovid19diagnosis
AT xiatian collaborativeonlineaiengineforctbasedcovid19diagnosis