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Rewiring the “Push-Pull” Catalytic Machinery of a Heme Enzyme Using an Expanded Genetic Code
[Image: see text] Nature employs a limited number of genetically encoded axial ligands to control diverse heme enzyme activities. Deciphering the functional significance of these ligands requires a quantitative understanding of how their electron-donating capabilities modulate the structures and rea...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273622/ https://www.ncbi.nlm.nih.gov/pubmed/32550044 http://dx.doi.org/10.1021/acscatal.9b05129 |
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author | Ortmayer, Mary Fisher, Karl Basran, Jaswir Wolde-Michael, Emmanuel M. Heyes, Derren J. Levy, Colin Lovelock, Sarah L. Anderson, J. L. Ross Raven, Emma L. Hay, Sam Rigby, Stephen E. J. Green, Anthony P. |
author_facet | Ortmayer, Mary Fisher, Karl Basran, Jaswir Wolde-Michael, Emmanuel M. Heyes, Derren J. Levy, Colin Lovelock, Sarah L. Anderson, J. L. Ross Raven, Emma L. Hay, Sam Rigby, Stephen E. J. Green, Anthony P. |
author_sort | Ortmayer, Mary |
collection | PubMed |
description | [Image: see text] Nature employs a limited number of genetically encoded axial ligands to control diverse heme enzyme activities. Deciphering the functional significance of these ligands requires a quantitative understanding of how their electron-donating capabilities modulate the structures and reactivities of the iconic ferryl intermediates compounds I and II. However, probing these relationships experimentally has proven to be challenging as ligand substitutions accessible via conventional mutagenesis do not allow fine tuning of electron donation and typically abolish catalytic function. Here, we exploit engineered translation components to replace the histidine ligand of cytochrome c peroxidase (CcP) by a less electron-donating N(δ)-methyl histidine (Me-His) with little effect on the enzyme structure. The rate of formation (k(1)) and the reactivity (k(2)) of compound I are unaffected by ligand substitution. In contrast, proton-coupled electron transfer to compound II (k(3)) is 10-fold slower in CcP Me-His, providing a direct link between electron donation and compound II reactivity, which can be explained by weaker electron donation from the Me-His ligand (“the push”) affording an electron-deficient ferryl oxygen with reduced proton affinity (“the pull”). The deleterious effects of the Me-His ligand can be fully compensated by introducing a W51F mutation designed to increase “the pull” by removing a hydrogen bond to the ferryl oxygen. Analogous substitutions in ascorbate peroxidase lead to similar activity trends to those observed in CcP, suggesting that a common mechanistic strategy is employed by enzymes using distinct electron transfer pathways. Our study highlights how noncanonical active site substitutions can be used to directly probe and deconstruct highly evolved bioinorganic mechanisms. |
format | Online Article Text |
id | pubmed-7273622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-72736222020-06-15 Rewiring the “Push-Pull” Catalytic Machinery of a Heme Enzyme Using an Expanded Genetic Code Ortmayer, Mary Fisher, Karl Basran, Jaswir Wolde-Michael, Emmanuel M. Heyes, Derren J. Levy, Colin Lovelock, Sarah L. Anderson, J. L. Ross Raven, Emma L. Hay, Sam Rigby, Stephen E. J. Green, Anthony P. ACS Catal [Image: see text] Nature employs a limited number of genetically encoded axial ligands to control diverse heme enzyme activities. Deciphering the functional significance of these ligands requires a quantitative understanding of how their electron-donating capabilities modulate the structures and reactivities of the iconic ferryl intermediates compounds I and II. However, probing these relationships experimentally has proven to be challenging as ligand substitutions accessible via conventional mutagenesis do not allow fine tuning of electron donation and typically abolish catalytic function. Here, we exploit engineered translation components to replace the histidine ligand of cytochrome c peroxidase (CcP) by a less electron-donating N(δ)-methyl histidine (Me-His) with little effect on the enzyme structure. The rate of formation (k(1)) and the reactivity (k(2)) of compound I are unaffected by ligand substitution. In contrast, proton-coupled electron transfer to compound II (k(3)) is 10-fold slower in CcP Me-His, providing a direct link between electron donation and compound II reactivity, which can be explained by weaker electron donation from the Me-His ligand (“the push”) affording an electron-deficient ferryl oxygen with reduced proton affinity (“the pull”). The deleterious effects of the Me-His ligand can be fully compensated by introducing a W51F mutation designed to increase “the pull” by removing a hydrogen bond to the ferryl oxygen. Analogous substitutions in ascorbate peroxidase lead to similar activity trends to those observed in CcP, suggesting that a common mechanistic strategy is employed by enzymes using distinct electron transfer pathways. Our study highlights how noncanonical active site substitutions can be used to directly probe and deconstruct highly evolved bioinorganic mechanisms. American Chemical Society 2020-01-29 2020-02-21 /pmc/articles/PMC7273622/ /pubmed/32550044 http://dx.doi.org/10.1021/acscatal.9b05129 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Ortmayer, Mary Fisher, Karl Basran, Jaswir Wolde-Michael, Emmanuel M. Heyes, Derren J. Levy, Colin Lovelock, Sarah L. Anderson, J. L. Ross Raven, Emma L. Hay, Sam Rigby, Stephen E. J. Green, Anthony P. Rewiring the “Push-Pull” Catalytic Machinery of a Heme Enzyme Using an Expanded Genetic Code |
title | Rewiring the “Push-Pull” Catalytic Machinery
of a Heme Enzyme Using an Expanded Genetic Code |
title_full | Rewiring the “Push-Pull” Catalytic Machinery
of a Heme Enzyme Using an Expanded Genetic Code |
title_fullStr | Rewiring the “Push-Pull” Catalytic Machinery
of a Heme Enzyme Using an Expanded Genetic Code |
title_full_unstemmed | Rewiring the “Push-Pull” Catalytic Machinery
of a Heme Enzyme Using an Expanded Genetic Code |
title_short | Rewiring the “Push-Pull” Catalytic Machinery
of a Heme Enzyme Using an Expanded Genetic Code |
title_sort | rewiring the “push-pull” catalytic machinery
of a heme enzyme using an expanded genetic code |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273622/ https://www.ncbi.nlm.nih.gov/pubmed/32550044 http://dx.doi.org/10.1021/acscatal.9b05129 |
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