Cargando…
Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol
The asymmetric unit of the title compound, C(17)H(14)N(2)O, contains two independent molecules each consisting of perimidine and phenol units. The tricyclic perimidine units contain naphthalene ring systems and non-planar C(4)N(2) rings adopting envelope conformations with the C atoms of the NCN gr...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273993/ https://www.ncbi.nlm.nih.gov/pubmed/32523742 http://dx.doi.org/10.1107/S2056989020005939 |
_version_ | 1783542503920631808 |
---|---|
author | Daouda, Ballo Tuo, Nanou Tiéba Kangah, Niameke Jean-Baptiste Hökelek, Tuncer Kodjo, Charles Guillaume Retailleau, Pascal Essassi, El Mokhtar |
author_facet | Daouda, Ballo Tuo, Nanou Tiéba Kangah, Niameke Jean-Baptiste Hökelek, Tuncer Kodjo, Charles Guillaume Retailleau, Pascal Essassi, El Mokhtar |
author_sort | Daouda, Ballo |
collection | PubMed |
description | The asymmetric unit of the title compound, C(17)H(14)N(2)O, contains two independent molecules each consisting of perimidine and phenol units. The tricyclic perimidine units contain naphthalene ring systems and non-planar C(4)N(2) rings adopting envelope conformations with the C atoms of the NCN groups hinged by 44.11 (7) and 48.50 (6)° with respect to the best planes of the other five atoms. Intramolecular O—H⋯N hydrogen bonds may help to consolidate the molecular conformations. The two independent molecules are linked through an N—H⋯O hydrogen bond. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (52.9%) and H⋯C/C⋯H (39.5%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. |
format | Online Article Text |
id | pubmed-7273993 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-72739932020-06-09 Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol Daouda, Ballo Tuo, Nanou Tiéba Kangah, Niameke Jean-Baptiste Hökelek, Tuncer Kodjo, Charles Guillaume Retailleau, Pascal Essassi, El Mokhtar Acta Crystallogr E Crystallogr Commun Research Communications The asymmetric unit of the title compound, C(17)H(14)N(2)O, contains two independent molecules each consisting of perimidine and phenol units. The tricyclic perimidine units contain naphthalene ring systems and non-planar C(4)N(2) rings adopting envelope conformations with the C atoms of the NCN groups hinged by 44.11 (7) and 48.50 (6)° with respect to the best planes of the other five atoms. Intramolecular O—H⋯N hydrogen bonds may help to consolidate the molecular conformations. The two independent molecules are linked through an N—H⋯O hydrogen bond. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (52.9%) and H⋯C/C⋯H (39.5%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. International Union of Crystallography 2020-05-05 /pmc/articles/PMC7273993/ /pubmed/32523742 http://dx.doi.org/10.1107/S2056989020005939 Text en © Daouda et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Daouda, Ballo Tuo, Nanou Tiéba Kangah, Niameke Jean-Baptiste Hökelek, Tuncer Kodjo, Charles Guillaume Retailleau, Pascal Essassi, El Mokhtar Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol |
title | Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol |
title_full | Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol |
title_fullStr | Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol |
title_full_unstemmed | Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol |
title_short | Crystal structure, Hirshfeld surface analysis and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)phenol |
title_sort | crystal structure, hirshfeld surface analysis and dft studies of 2-(2,3-dihydro-1h-perimidin-2-yl)phenol |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273993/ https://www.ncbi.nlm.nih.gov/pubmed/32523742 http://dx.doi.org/10.1107/S2056989020005939 |
work_keys_str_mv | AT daoudaballo crystalstructurehirshfeldsurfaceanalysisanddftstudiesof223dihydro1hperimidin2ylphenol AT tuonanoutieba crystalstructurehirshfeldsurfaceanalysisanddftstudiesof223dihydro1hperimidin2ylphenol AT kangahniamekejeanbaptiste crystalstructurehirshfeldsurfaceanalysisanddftstudiesof223dihydro1hperimidin2ylphenol AT hokelektuncer crystalstructurehirshfeldsurfaceanalysisanddftstudiesof223dihydro1hperimidin2ylphenol AT kodjocharlesguillaume crystalstructurehirshfeldsurfaceanalysisanddftstudiesof223dihydro1hperimidin2ylphenol AT retailleaupascal crystalstructurehirshfeldsurfaceanalysisanddftstudiesof223dihydro1hperimidin2ylphenol AT essassielmokhtar crystalstructurehirshfeldsurfaceanalysisanddftstudiesof223dihydro1hperimidin2ylphenol |