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COVID-19 UK Lockdown Forecasts and R(0)

Introduction: The first reported UK case of COVID-19 occurred on 30 January 2020. A lockdown from 24 March was partially relaxed on 10 May. One model to forecast disease spread depends on clinical parameters and transmission rates. Output includes the basic reproduction number R(0) and the log growt...

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Autor principal: Dropkin, Greg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7274132/
https://www.ncbi.nlm.nih.gov/pubmed/32574315
http://dx.doi.org/10.3389/fpubh.2020.00256
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author Dropkin, Greg
author_facet Dropkin, Greg
author_sort Dropkin, Greg
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description Introduction: The first reported UK case of COVID-19 occurred on 30 January 2020. A lockdown from 24 March was partially relaxed on 10 May. One model to forecast disease spread depends on clinical parameters and transmission rates. Output includes the basic reproduction number R(0) and the log growth rate r in the exponential phase. Methods: Office for National Statistics data on deaths in England and Wales is used to estimate r. A likelihood for the transmission parameters is defined from a gaussian density for r using the mean and standard error of the estimate. Parameter samples from the Metropolis-Hastings algorithm lead to an estimate and credible interval for R(0) and forecasts for cases and deaths. Results: The UK initial log growth rate is r = 0.254 with s.e. 0.004. R(0) = 6.94 with 95% CI (6.52, 7.39). In a 12 week lockdown from 24 March with transmission parameters reduced throughout to 5% of their previous values, peaks of around 90,000 severely and 25,000 critically ill patients, and 44,000 cumulative deaths are expected by 16 June. With transmission rising from 5% in mid-April to reach 30%, 50,000 deaths and 475,000 active cases are expected in mid-June. Had such a lockdown begun on 17 March, around 30,000 (28,000, 32,000) fewer cumulative deaths would be expected by 9 June. Discussion: The R(0) estimate is compatible with some international estimates but over twice the value quoted by the UK government. An earlier lockdown could have saved many thousands of lives.
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spelling pubmed-72741322020-06-15 COVID-19 UK Lockdown Forecasts and R(0) Dropkin, Greg Front Public Health Public Health Introduction: The first reported UK case of COVID-19 occurred on 30 January 2020. A lockdown from 24 March was partially relaxed on 10 May. One model to forecast disease spread depends on clinical parameters and transmission rates. Output includes the basic reproduction number R(0) and the log growth rate r in the exponential phase. Methods: Office for National Statistics data on deaths in England and Wales is used to estimate r. A likelihood for the transmission parameters is defined from a gaussian density for r using the mean and standard error of the estimate. Parameter samples from the Metropolis-Hastings algorithm lead to an estimate and credible interval for R(0) and forecasts for cases and deaths. Results: The UK initial log growth rate is r = 0.254 with s.e. 0.004. R(0) = 6.94 with 95% CI (6.52, 7.39). In a 12 week lockdown from 24 March with transmission parameters reduced throughout to 5% of their previous values, peaks of around 90,000 severely and 25,000 critically ill patients, and 44,000 cumulative deaths are expected by 16 June. With transmission rising from 5% in mid-April to reach 30%, 50,000 deaths and 475,000 active cases are expected in mid-June. Had such a lockdown begun on 17 March, around 30,000 (28,000, 32,000) fewer cumulative deaths would be expected by 9 June. Discussion: The R(0) estimate is compatible with some international estimates but over twice the value quoted by the UK government. An earlier lockdown could have saved many thousands of lives. Frontiers Media S.A. 2020-05-29 /pmc/articles/PMC7274132/ /pubmed/32574315 http://dx.doi.org/10.3389/fpubh.2020.00256 Text en Copyright © 2020 Dropkin. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Public Health
Dropkin, Greg
COVID-19 UK Lockdown Forecasts and R(0)
title COVID-19 UK Lockdown Forecasts and R(0)
title_full COVID-19 UK Lockdown Forecasts and R(0)
title_fullStr COVID-19 UK Lockdown Forecasts and R(0)
title_full_unstemmed COVID-19 UK Lockdown Forecasts and R(0)
title_short COVID-19 UK Lockdown Forecasts and R(0)
title_sort covid-19 uk lockdown forecasts and r(0)
topic Public Health
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7274132/
https://www.ncbi.nlm.nih.gov/pubmed/32574315
http://dx.doi.org/10.3389/fpubh.2020.00256
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