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Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study
BACKGROUND: Accurate lymph nodes (LNs) assessment is important for rectal cancer (RC) staging in multiparametric magnetic resonance imaging (mpMRI). However, it is incredibly time-consumming to identify all the LNs in scan region. This study aims to develop and validate a deep-learning-based, fully-...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7276514/ https://www.ncbi.nlm.nih.gov/pubmed/32512507 http://dx.doi.org/10.1016/j.ebiom.2020.102780 |
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author | Zhao, Xingyu Xie, Peiyi Wang, Mengmeng Li, Wenru Pickhardt, Perry J. Xia, Wei Xiong, Fei Zhang, Rui Xie, Yao Jian, Junming Bai, Honglin Ni, Caifang Gu, Jinhui Yu, Tao Tang, Yuguo Gao, Xin Meng, Xiaochun |
author_facet | Zhao, Xingyu Xie, Peiyi Wang, Mengmeng Li, Wenru Pickhardt, Perry J. Xia, Wei Xiong, Fei Zhang, Rui Xie, Yao Jian, Junming Bai, Honglin Ni, Caifang Gu, Jinhui Yu, Tao Tang, Yuguo Gao, Xin Meng, Xiaochun |
author_sort | Zhao, Xingyu |
collection | PubMed |
description | BACKGROUND: Accurate lymph nodes (LNs) assessment is important for rectal cancer (RC) staging in multiparametric magnetic resonance imaging (mpMRI). However, it is incredibly time-consumming to identify all the LNs in scan region. This study aims to develop and validate a deep-learning-based, fully-automated lymph node detection and segmentation (auto-LNDS) model based on mpMRI. METHODS: In total, 5789 annotated LNs (diameter ≥ 3 mm) in mpMRI from 293 patients with RC in a single center were enrolled. Fused T2-weighted images (T2WI) and diffusion-weighted images (DWI) provided input for the deep learning framework Mask R-CNN through transfer learning to generate the auto-LNDS model. The model was then validated both on the internal and external datasets consisting of 935 LNs and 1198 LNs, respectively. The performance for LNs detection was evaluated using sensitivity, positive predictive value (PPV), and false positive rate per case (FP/vol), and segmentation performance was evaluated using the Dice similarity coefficient (DSC). FINDINGS: For LNs detection, auto-LNDS achieved sensitivity, PPV, and FP/vol of 80.0%, 73.5% and 8.6 in internal testing, and 62.6%, 64.5%, and 8.2 in external testing, respectively, significantly better than the performance of junior radiologists. The time taken for model detection and segmentation was 1.3 s/case, compared with 200 s/case for the radiologists. For LNs segmentation, the DSC of the model was in the range of 0.81–0.82. INTERPRETATION: This deep learning–based auto-LNDS model can achieve pelvic LNseffectively based on mpMRI for RC, and holds great potential for facilitating N-staging in clinical practice. |
format | Online Article Text |
id | pubmed-7276514 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-72765142020-06-10 Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study Zhao, Xingyu Xie, Peiyi Wang, Mengmeng Li, Wenru Pickhardt, Perry J. Xia, Wei Xiong, Fei Zhang, Rui Xie, Yao Jian, Junming Bai, Honglin Ni, Caifang Gu, Jinhui Yu, Tao Tang, Yuguo Gao, Xin Meng, Xiaochun EBioMedicine Research paper BACKGROUND: Accurate lymph nodes (LNs) assessment is important for rectal cancer (RC) staging in multiparametric magnetic resonance imaging (mpMRI). However, it is incredibly time-consumming to identify all the LNs in scan region. This study aims to develop and validate a deep-learning-based, fully-automated lymph node detection and segmentation (auto-LNDS) model based on mpMRI. METHODS: In total, 5789 annotated LNs (diameter ≥ 3 mm) in mpMRI from 293 patients with RC in a single center were enrolled. Fused T2-weighted images (T2WI) and diffusion-weighted images (DWI) provided input for the deep learning framework Mask R-CNN through transfer learning to generate the auto-LNDS model. The model was then validated both on the internal and external datasets consisting of 935 LNs and 1198 LNs, respectively. The performance for LNs detection was evaluated using sensitivity, positive predictive value (PPV), and false positive rate per case (FP/vol), and segmentation performance was evaluated using the Dice similarity coefficient (DSC). FINDINGS: For LNs detection, auto-LNDS achieved sensitivity, PPV, and FP/vol of 80.0%, 73.5% and 8.6 in internal testing, and 62.6%, 64.5%, and 8.2 in external testing, respectively, significantly better than the performance of junior radiologists. The time taken for model detection and segmentation was 1.3 s/case, compared with 200 s/case for the radiologists. For LNs segmentation, the DSC of the model was in the range of 0.81–0.82. INTERPRETATION: This deep learning–based auto-LNDS model can achieve pelvic LNseffectively based on mpMRI for RC, and holds great potential for facilitating N-staging in clinical practice. Elsevier 2020-06-05 /pmc/articles/PMC7276514/ /pubmed/32512507 http://dx.doi.org/10.1016/j.ebiom.2020.102780 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research paper Zhao, Xingyu Xie, Peiyi Wang, Mengmeng Li, Wenru Pickhardt, Perry J. Xia, Wei Xiong, Fei Zhang, Rui Xie, Yao Jian, Junming Bai, Honglin Ni, Caifang Gu, Jinhui Yu, Tao Tang, Yuguo Gao, Xin Meng, Xiaochun Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study |
title | Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study |
title_full | Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study |
title_fullStr | Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study |
title_full_unstemmed | Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study |
title_short | Deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: A multicentre study |
title_sort | deep learning–based fully automated detection and segmentation of lymph nodes on multiparametric-mri for rectal cancer: a multicentre study |
topic | Research paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7276514/ https://www.ncbi.nlm.nih.gov/pubmed/32512507 http://dx.doi.org/10.1016/j.ebiom.2020.102780 |
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