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Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae)
Aspidistra is a large genus of herbaceous plants with more than 130 species growing in tropical forests of SE Asia and specially diversified in southern China and northern Vietnam. The genus is characterized by its evergreen understorey habitats with flowers set at ground level and more or less hidd...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7276517/ https://www.ncbi.nlm.nih.gov/pubmed/32529008 http://dx.doi.org/10.1016/j.dib.2020.105738 |
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author | Meng, Ran Zhang, Ji-Yuan Zhang, Dai-Gui Nie, Ze-Long Meng, Ying |
author_facet | Meng, Ran Zhang, Ji-Yuan Zhang, Dai-Gui Nie, Ze-Long Meng, Ying |
author_sort | Meng, Ran |
collection | PubMed |
description | Aspidistra is a large genus of herbaceous plants with more than 130 species growing in tropical forests of SE Asia and specially diversified in southern China and northern Vietnam. The genus is characterized by its evergreen understorey habitats with flowers set at ground level and more or less hidden in litter material. Aspidistra fenghuangensis is a species currently only known from central China. In recent years, number of species in this genus has been greatly increased. However, the high throughput sequencing data have never been reported in this genus. Here, we sequenced the transcriptome of A. fenghuangensis obtained from young leaves using the Illumina HiSeq2000 with 9.15Gb of clean data. Because of the absence of a reference-grade genome in the genus, a de novo assembly of the transcriptome data with full annotation have been carried out. This data is accessible via NCBI BioProject (PRJNA608213). |
format | Online Article Text |
id | pubmed-7276517 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-72765172020-06-10 Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae) Meng, Ran Zhang, Ji-Yuan Zhang, Dai-Gui Nie, Ze-Long Meng, Ying Data Brief Genetics, Genomics and Molecular Biology Aspidistra is a large genus of herbaceous plants with more than 130 species growing in tropical forests of SE Asia and specially diversified in southern China and northern Vietnam. The genus is characterized by its evergreen understorey habitats with flowers set at ground level and more or less hidden in litter material. Aspidistra fenghuangensis is a species currently only known from central China. In recent years, number of species in this genus has been greatly increased. However, the high throughput sequencing data have never been reported in this genus. Here, we sequenced the transcriptome of A. fenghuangensis obtained from young leaves using the Illumina HiSeq2000 with 9.15Gb of clean data. Because of the absence of a reference-grade genome in the genus, a de novo assembly of the transcriptome data with full annotation have been carried out. This data is accessible via NCBI BioProject (PRJNA608213). Elsevier 2020-05-21 /pmc/articles/PMC7276517/ /pubmed/32529008 http://dx.doi.org/10.1016/j.dib.2020.105738 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Genetics, Genomics and Molecular Biology Meng, Ran Zhang, Ji-Yuan Zhang, Dai-Gui Nie, Ze-Long Meng, Ying Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae) |
title | Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae) |
title_full | Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae) |
title_fullStr | Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae) |
title_full_unstemmed | Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae) |
title_short | Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae) |
title_sort | data of de novo assembly and annotation of transcriptome from aspidistra fenghuangensis (asparagaceae: nolinoideae) |
topic | Genetics, Genomics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7276517/ https://www.ncbi.nlm.nih.gov/pubmed/32529008 http://dx.doi.org/10.1016/j.dib.2020.105738 |
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