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Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations
The crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O, orthorhombic, a = 17.3785 (9) Å, b = 15.9864 (8) Å, c = 13.5477 (10) Å, V = 3763.8 (4) Å(3), space group Pbca, Z = 8 has been refined from single-crystal XRD data to R = 0.042 for 3182 unique [I > 3σ(I)] reflections and...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278090/ https://www.ncbi.nlm.nih.gov/pubmed/32831267 http://dx.doi.org/10.1107/S2052520620005739 |
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author | Plášil, Jakub Kiefer, Boris Ghazisaeed, Seyedat Philippo, Simon |
author_facet | Plášil, Jakub Kiefer, Boris Ghazisaeed, Seyedat Philippo, Simon |
author_sort | Plášil, Jakub |
collection | PubMed |
description | The crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O, orthorhombic, a = 17.3785 (9) Å, b = 15.9864 (8) Å, c = 13.5477 (10) Å, V = 3763.8 (4) Å(3), space group Pbca, Z = 8 has been refined from single-crystal XRD data to R = 0.042 for 3182 unique [I > 3σ(I)] reflections and the hydrogen-bonding scheme has been refined by theoretical calculations based on the TORQUE method. The phurcalite structure is layered, with uranyl phosphate sheets of the phosphuranylite topology which are linked by extensive hydrogen bonds across the interlayer occupied by Ca(2+) cations and H(2)O groups. In contrast to previous studies the approach here reveals five transformer H(2)O groups (compared to three expected by a previous study) and two non-transformer H(2)O groups. One of the transformer H(2)O groups is, nevertheless, not linked to any metal cation, which is a less frequent type of H(2)O bonding in solid state compounds and minerals. The structural formula of phurcalite has been therefore redefined as {Ca(2)(H(2) ([3])O)(5)(H(2) ([4])O)(2)}[(UO(2))(3)O(2)(PO(4))(2)], Z = 8. |
format | Online Article Text |
id | pubmed-7278090 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-72780902020-06-25 Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations Plášil, Jakub Kiefer, Boris Ghazisaeed, Seyedat Philippo, Simon Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers The crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O, orthorhombic, a = 17.3785 (9) Å, b = 15.9864 (8) Å, c = 13.5477 (10) Å, V = 3763.8 (4) Å(3), space group Pbca, Z = 8 has been refined from single-crystal XRD data to R = 0.042 for 3182 unique [I > 3σ(I)] reflections and the hydrogen-bonding scheme has been refined by theoretical calculations based on the TORQUE method. The phurcalite structure is layered, with uranyl phosphate sheets of the phosphuranylite topology which are linked by extensive hydrogen bonds across the interlayer occupied by Ca(2+) cations and H(2)O groups. In contrast to previous studies the approach here reveals five transformer H(2)O groups (compared to three expected by a previous study) and two non-transformer H(2)O groups. One of the transformer H(2)O groups is, nevertheless, not linked to any metal cation, which is a less frequent type of H(2)O bonding in solid state compounds and minerals. The structural formula of phurcalite has been therefore redefined as {Ca(2)(H(2) ([3])O)(5)(H(2) ([4])O)(2)}[(UO(2))(3)O(2)(PO(4))(2)], Z = 8. International Union of Crystallography 2020-05-27 /pmc/articles/PMC7278090/ /pubmed/32831267 http://dx.doi.org/10.1107/S2052520620005739 Text en © Jakub Plášil et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Plášil, Jakub Kiefer, Boris Ghazisaeed, Seyedat Philippo, Simon Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations |
title | Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations |
title_full | Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations |
title_fullStr | Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations |
title_full_unstemmed | Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations |
title_short | Hydrogen bonding in the crystal structure of phurcalite, Ca(2)[(UO(2))(3)O(2)(PO(4))(2)]·7H(2)O: single-crystal X-ray study and TORQUE calculations |
title_sort | hydrogen bonding in the crystal structure of phurcalite, ca(2)[(uo(2))(3)o(2)(po(4))(2)]·7h(2)o: single-crystal x-ray study and torque calculations |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278090/ https://www.ncbi.nlm.nih.gov/pubmed/32831267 http://dx.doi.org/10.1107/S2052520620005739 |
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