Cargando…
Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs
μNS is a 70 kDa major nonstructural protein of avian reoviruses, which cause significant economic losses in the poultry industry. They replicate inside viral factories in host cells, and the μNS protein has been suggested to be the minimal viral factor required for factory formation. Thus, determini...
Autores principales: | , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278499/ https://www.ncbi.nlm.nih.gov/pubmed/32510469 http://dx.doi.org/10.1107/S2053230X20006172 |
_version_ | 1783543347938328576 |
---|---|
author | Nagaratnam, Nirupa Tang, Yanyang Botha, Sabine Saul, Justin Li, Chufeng Hu, Hao Zaare, Sahba Hunter, Mark Lowry, David Weierstall, Uwe Zatsepin, Nadia Spence, John C. H. Qiu, Ji LaBaer, Joshua Fromme, Petra Martin-Garcia, Jose M. |
author_facet | Nagaratnam, Nirupa Tang, Yanyang Botha, Sabine Saul, Justin Li, Chufeng Hu, Hao Zaare, Sahba Hunter, Mark Lowry, David Weierstall, Uwe Zatsepin, Nadia Spence, John C. H. Qiu, Ji LaBaer, Joshua Fromme, Petra Martin-Garcia, Jose M. |
author_sort | Nagaratnam, Nirupa |
collection | PubMed |
description | μNS is a 70 kDa major nonstructural protein of avian reoviruses, which cause significant economic losses in the poultry industry. They replicate inside viral factories in host cells, and the μNS protein has been suggested to be the minimal viral factor required for factory formation. Thus, determining the structure of μNS is of great importance for understanding its role in viral infection. In the study presented here, a fragment consisting of residues 448–605 of μNS was expressed as an EGFP fusion protein in Sf9 insect cells. EGFP-μNS((448–605)) crystallization in Sf9 cells was monitored and verified by several imaging techniques. Cells infected with the EGFP-μNS((448–605)) baculovirus formed rod-shaped microcrystals (5–15 µm in length) which were reconstituted in high-viscosity media (LCP and agarose) and investigated by serial femtosecond X-ray diffraction using viscous jets at an X-ray free-electron laser (XFEL). The crystals diffracted to 4.5 Å resolution. A total of 4227 diffraction snapshots were successfully indexed into a hexagonal lattice with unit-cell parameters a = 109.29, b = 110.29, c = 324.97 Å. The final data set was merged and refined to 7.0 Å resolution. Preliminary electron-density maps were obtained. While more diffraction data are required to solve the structure of μNS((448–605)), the current experimental strategy, which couples high-viscosity crystal delivery at an XFEL with in cellulo crystallization, paves the way towards structure determination of the μNS protein. |
format | Online Article Text |
id | pubmed-7278499 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-72784992020-06-25 Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs Nagaratnam, Nirupa Tang, Yanyang Botha, Sabine Saul, Justin Li, Chufeng Hu, Hao Zaare, Sahba Hunter, Mark Lowry, David Weierstall, Uwe Zatsepin, Nadia Spence, John C. H. Qiu, Ji LaBaer, Joshua Fromme, Petra Martin-Garcia, Jose M. Acta Crystallogr F Struct Biol Commun Method Communications μNS is a 70 kDa major nonstructural protein of avian reoviruses, which cause significant economic losses in the poultry industry. They replicate inside viral factories in host cells, and the μNS protein has been suggested to be the minimal viral factor required for factory formation. Thus, determining the structure of μNS is of great importance for understanding its role in viral infection. In the study presented here, a fragment consisting of residues 448–605 of μNS was expressed as an EGFP fusion protein in Sf9 insect cells. EGFP-μNS((448–605)) crystallization in Sf9 cells was monitored and verified by several imaging techniques. Cells infected with the EGFP-μNS((448–605)) baculovirus formed rod-shaped microcrystals (5–15 µm in length) which were reconstituted in high-viscosity media (LCP and agarose) and investigated by serial femtosecond X-ray diffraction using viscous jets at an X-ray free-electron laser (XFEL). The crystals diffracted to 4.5 Å resolution. A total of 4227 diffraction snapshots were successfully indexed into a hexagonal lattice with unit-cell parameters a = 109.29, b = 110.29, c = 324.97 Å. The final data set was merged and refined to 7.0 Å resolution. Preliminary electron-density maps were obtained. While more diffraction data are required to solve the structure of μNS((448–605)), the current experimental strategy, which couples high-viscosity crystal delivery at an XFEL with in cellulo crystallization, paves the way towards structure determination of the μNS protein. International Union of Crystallography 2020-05-29 /pmc/articles/PMC7278499/ /pubmed/32510469 http://dx.doi.org/10.1107/S2053230X20006172 Text en © Nagaratnam et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Method Communications Nagaratnam, Nirupa Tang, Yanyang Botha, Sabine Saul, Justin Li, Chufeng Hu, Hao Zaare, Sahba Hunter, Mark Lowry, David Weierstall, Uwe Zatsepin, Nadia Spence, John C. H. Qiu, Ji LaBaer, Joshua Fromme, Petra Martin-Garcia, Jose M. Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs |
title | Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs |
title_full | Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs |
title_fullStr | Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs |
title_full_unstemmed | Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs |
title_short | Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs |
title_sort | enhanced x-ray diffraction of in vivo-grown μns crystals by viscous jets at xfels |
topic | Method Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278499/ https://www.ncbi.nlm.nih.gov/pubmed/32510469 http://dx.doi.org/10.1107/S2053230X20006172 |
work_keys_str_mv | AT nagaratnamnirupa enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT tangyanyang enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT bothasabine enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT sauljustin enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT lichufeng enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT huhao enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT zaaresahba enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT huntermark enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT lowrydavid enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT weierstalluwe enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT zatsepinnadia enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT spencejohnch enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT qiuji enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT labaerjoshua enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT frommepetra enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels AT martingarciajosem enhancedxraydiffractionofinvivogrownmnscrystalsbyviscousjetsatxfels |