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Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning

OBJECTIVES: Electronic Health Records (EHRs)-based surveillance systems are being actively developed for detecting adverse drug reactions (ADRs), but this is being hindered by the difficulty of extracting data from unstructured records. This study performed the analysis of ADRs from nursing notes fo...

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Autores principales: Jeon, Eunjoo, Kim, Youngsam, Park, Hojun, Park, Rae Woong, Shin, Hyopil, Park, Hyeoun-Ae
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Medical Informatics 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278512/
https://www.ncbi.nlm.nih.gov/pubmed/32547807
http://dx.doi.org/10.4258/hir.2020.26.2.104
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author Jeon, Eunjoo
Kim, Youngsam
Park, Hojun
Park, Rae Woong
Shin, Hyopil
Park, Hyeoun-Ae
author_facet Jeon, Eunjoo
Kim, Youngsam
Park, Hojun
Park, Rae Woong
Shin, Hyopil
Park, Hyeoun-Ae
author_sort Jeon, Eunjoo
collection PubMed
description OBJECTIVES: Electronic Health Records (EHRs)-based surveillance systems are being actively developed for detecting adverse drug reactions (ADRs), but this is being hindered by the difficulty of extracting data from unstructured records. This study performed the analysis of ADRs from nursing notes for drug safety surveillance using the temporal difference method in reinforcement learning (TD learning). METHODS: Nursing notes of 8,316 patients (4,158 ADR and 4,158 non-ADR cases) admitted to Ajou University Hospital were used for the ADR classification task. A TD(λ) model was used to estimate state values for indicating the ADR risk. For the TD learning, each nursing phrase was encoded into one of seven states, and the state values estimated during training were employed for the subsequent testing phase. We applied logistic regression to the state values from the TD(λ) model for the classification task. RESULTS: The overall accuracy of TD-based logistic regression of 0.63 was comparable to that of two machine-learning methods (0.64 for a naïve Bayes classifier and 0.63 for a support vector machine), while it outperformed two deep learning-based methods (0.58 for a text convolutional neural network and 0.61 for a long short-term memory neural network). Most importantly, it was found that the TD-based method can estimate state values according to the context of nursing phrases. CONCLUSIONS: TD learning is a promising approach because it can exploit contextual, time-dependent aspects of the available data and provide an analysis of the severity of ADRs in a fully incremental manner.
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spelling pubmed-72785122020-06-15 Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning Jeon, Eunjoo Kim, Youngsam Park, Hojun Park, Rae Woong Shin, Hyopil Park, Hyeoun-Ae Healthc Inform Res Original Article OBJECTIVES: Electronic Health Records (EHRs)-based surveillance systems are being actively developed for detecting adverse drug reactions (ADRs), but this is being hindered by the difficulty of extracting data from unstructured records. This study performed the analysis of ADRs from nursing notes for drug safety surveillance using the temporal difference method in reinforcement learning (TD learning). METHODS: Nursing notes of 8,316 patients (4,158 ADR and 4,158 non-ADR cases) admitted to Ajou University Hospital were used for the ADR classification task. A TD(λ) model was used to estimate state values for indicating the ADR risk. For the TD learning, each nursing phrase was encoded into one of seven states, and the state values estimated during training were employed for the subsequent testing phase. We applied logistic regression to the state values from the TD(λ) model for the classification task. RESULTS: The overall accuracy of TD-based logistic regression of 0.63 was comparable to that of two machine-learning methods (0.64 for a naïve Bayes classifier and 0.63 for a support vector machine), while it outperformed two deep learning-based methods (0.58 for a text convolutional neural network and 0.61 for a long short-term memory neural network). Most importantly, it was found that the TD-based method can estimate state values according to the context of nursing phrases. CONCLUSIONS: TD learning is a promising approach because it can exploit contextual, time-dependent aspects of the available data and provide an analysis of the severity of ADRs in a fully incremental manner. Korean Society of Medical Informatics 2020-04 2020-04-30 /pmc/articles/PMC7278512/ /pubmed/32547807 http://dx.doi.org/10.4258/hir.2020.26.2.104 Text en © 2020 The Korean Society of Medical Informatics This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Jeon, Eunjoo
Kim, Youngsam
Park, Hojun
Park, Rae Woong
Shin, Hyopil
Park, Hyeoun-Ae
Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning
title Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning
title_full Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning
title_fullStr Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning
title_full_unstemmed Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning
title_short Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning
title_sort analysis of adverse drug reactions identified in nursing notes using reinforcement learning
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278512/
https://www.ncbi.nlm.nih.gov/pubmed/32547807
http://dx.doi.org/10.4258/hir.2020.26.2.104
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