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Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning
OBJECTIVES: Electronic Health Records (EHRs)-based surveillance systems are being actively developed for detecting adverse drug reactions (ADRs), but this is being hindered by the difficulty of extracting data from unstructured records. This study performed the analysis of ADRs from nursing notes fo...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korean Society of Medical Informatics
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278512/ https://www.ncbi.nlm.nih.gov/pubmed/32547807 http://dx.doi.org/10.4258/hir.2020.26.2.104 |
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author | Jeon, Eunjoo Kim, Youngsam Park, Hojun Park, Rae Woong Shin, Hyopil Park, Hyeoun-Ae |
author_facet | Jeon, Eunjoo Kim, Youngsam Park, Hojun Park, Rae Woong Shin, Hyopil Park, Hyeoun-Ae |
author_sort | Jeon, Eunjoo |
collection | PubMed |
description | OBJECTIVES: Electronic Health Records (EHRs)-based surveillance systems are being actively developed for detecting adverse drug reactions (ADRs), but this is being hindered by the difficulty of extracting data from unstructured records. This study performed the analysis of ADRs from nursing notes for drug safety surveillance using the temporal difference method in reinforcement learning (TD learning). METHODS: Nursing notes of 8,316 patients (4,158 ADR and 4,158 non-ADR cases) admitted to Ajou University Hospital were used for the ADR classification task. A TD(λ) model was used to estimate state values for indicating the ADR risk. For the TD learning, each nursing phrase was encoded into one of seven states, and the state values estimated during training were employed for the subsequent testing phase. We applied logistic regression to the state values from the TD(λ) model for the classification task. RESULTS: The overall accuracy of TD-based logistic regression of 0.63 was comparable to that of two machine-learning methods (0.64 for a naïve Bayes classifier and 0.63 for a support vector machine), while it outperformed two deep learning-based methods (0.58 for a text convolutional neural network and 0.61 for a long short-term memory neural network). Most importantly, it was found that the TD-based method can estimate state values according to the context of nursing phrases. CONCLUSIONS: TD learning is a promising approach because it can exploit contextual, time-dependent aspects of the available data and provide an analysis of the severity of ADRs in a fully incremental manner. |
format | Online Article Text |
id | pubmed-7278512 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Korean Society of Medical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-72785122020-06-15 Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning Jeon, Eunjoo Kim, Youngsam Park, Hojun Park, Rae Woong Shin, Hyopil Park, Hyeoun-Ae Healthc Inform Res Original Article OBJECTIVES: Electronic Health Records (EHRs)-based surveillance systems are being actively developed for detecting adverse drug reactions (ADRs), but this is being hindered by the difficulty of extracting data from unstructured records. This study performed the analysis of ADRs from nursing notes for drug safety surveillance using the temporal difference method in reinforcement learning (TD learning). METHODS: Nursing notes of 8,316 patients (4,158 ADR and 4,158 non-ADR cases) admitted to Ajou University Hospital were used for the ADR classification task. A TD(λ) model was used to estimate state values for indicating the ADR risk. For the TD learning, each nursing phrase was encoded into one of seven states, and the state values estimated during training were employed for the subsequent testing phase. We applied logistic regression to the state values from the TD(λ) model for the classification task. RESULTS: The overall accuracy of TD-based logistic regression of 0.63 was comparable to that of two machine-learning methods (0.64 for a naïve Bayes classifier and 0.63 for a support vector machine), while it outperformed two deep learning-based methods (0.58 for a text convolutional neural network and 0.61 for a long short-term memory neural network). Most importantly, it was found that the TD-based method can estimate state values according to the context of nursing phrases. CONCLUSIONS: TD learning is a promising approach because it can exploit contextual, time-dependent aspects of the available data and provide an analysis of the severity of ADRs in a fully incremental manner. Korean Society of Medical Informatics 2020-04 2020-04-30 /pmc/articles/PMC7278512/ /pubmed/32547807 http://dx.doi.org/10.4258/hir.2020.26.2.104 Text en © 2020 The Korean Society of Medical Informatics This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Jeon, Eunjoo Kim, Youngsam Park, Hojun Park, Rae Woong Shin, Hyopil Park, Hyeoun-Ae Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning |
title | Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning |
title_full | Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning |
title_fullStr | Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning |
title_full_unstemmed | Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning |
title_short | Analysis of Adverse Drug Reactions Identified in Nursing Notes Using Reinforcement Learning |
title_sort | analysis of adverse drug reactions identified in nursing notes using reinforcement learning |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7278512/ https://www.ncbi.nlm.nih.gov/pubmed/32547807 http://dx.doi.org/10.4258/hir.2020.26.2.104 |
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