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Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants

A collection of cultivated Liriope and Ophiopogon plants was established in 1996–1998 and subsequently hosted at a horticultural college. Uncertainties about the identification of the accessions, compounded by potential errors in propagation and labelling have led to waning confidence in the identit...

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Autores principales: Masiero, Eva, Banik, Dipanwita, Abson, John, Greene, Paul, Slater, Adrian, Sgamma, Tiziana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284512/
https://www.ncbi.nlm.nih.gov/pubmed/32349369
http://dx.doi.org/10.3390/plants9050558
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author Masiero, Eva
Banik, Dipanwita
Abson, John
Greene, Paul
Slater, Adrian
Sgamma, Tiziana
author_facet Masiero, Eva
Banik, Dipanwita
Abson, John
Greene, Paul
Slater, Adrian
Sgamma, Tiziana
author_sort Masiero, Eva
collection PubMed
description A collection of cultivated Liriope and Ophiopogon plants was established in 1996–1998 and subsequently hosted at a horticultural college. Uncertainties about the identification of the accessions, compounded by potential errors in propagation and labelling have led to waning confidence in the identities of the plants in the collection. The potential for using DNA barcoding to determine the species identities of the accessions was investigated. The DNA barcode regions of the plastid ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit gene (rbcL) and nuclear ribosomal internal transcribed spacer (nrITS) were amplified. DNA sequence analysis allowed the sequences of the accessions to be compared to reference sequences in public databases. A simple haplotype map of the characteristic polymorphic positions in the rbcL regions was used to clearly distinguish between the two genera and assign Ophiopogon accessions to individual species or sub-groups of species. The ITS sequence data confirmed these genus and species assignations and provided greater resolution to distinguish between closely related species. The combination of two DNA barcodes allowed most of the accessions to be assigned to individual species. This molecular verification confirmed the identity of about 70% of the accessions, with the remaining 30% demonstrating a range of mistaken identities at the species and genus levels.
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spelling pubmed-72845122020-06-19 Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants Masiero, Eva Banik, Dipanwita Abson, John Greene, Paul Slater, Adrian Sgamma, Tiziana Plants (Basel) Article A collection of cultivated Liriope and Ophiopogon plants was established in 1996–1998 and subsequently hosted at a horticultural college. Uncertainties about the identification of the accessions, compounded by potential errors in propagation and labelling have led to waning confidence in the identities of the plants in the collection. The potential for using DNA barcoding to determine the species identities of the accessions was investigated. The DNA barcode regions of the plastid ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit gene (rbcL) and nuclear ribosomal internal transcribed spacer (nrITS) were amplified. DNA sequence analysis allowed the sequences of the accessions to be compared to reference sequences in public databases. A simple haplotype map of the characteristic polymorphic positions in the rbcL regions was used to clearly distinguish between the two genera and assign Ophiopogon accessions to individual species or sub-groups of species. The ITS sequence data confirmed these genus and species assignations and provided greater resolution to distinguish between closely related species. The combination of two DNA barcodes allowed most of the accessions to be assigned to individual species. This molecular verification confirmed the identity of about 70% of the accessions, with the remaining 30% demonstrating a range of mistaken identities at the species and genus levels. MDPI 2020-04-27 /pmc/articles/PMC7284512/ /pubmed/32349369 http://dx.doi.org/10.3390/plants9050558 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Masiero, Eva
Banik, Dipanwita
Abson, John
Greene, Paul
Slater, Adrian
Sgamma, Tiziana
Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants
title Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants
title_full Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants
title_fullStr Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants
title_full_unstemmed Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants
title_short Molecular Verification of the UK National Collection of Cultivated Liriope and Ophiopogon Plants
title_sort molecular verification of the uk national collection of cultivated liriope and ophiopogon plants
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284512/
https://www.ncbi.nlm.nih.gov/pubmed/32349369
http://dx.doi.org/10.3390/plants9050558
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