Cargando…
Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France
The number of screening tests carried out in France and the methodology used to target the patients tested do not allow for a direct computation of the actual number of cases and the infection fatality ratio (IFR). The main objective of this work is to estimate the actual number of people infected w...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284549/ https://www.ncbi.nlm.nih.gov/pubmed/32397286 http://dx.doi.org/10.3390/biology9050097 |
_version_ | 1783544493168918528 |
---|---|
author | Roques, Lionel Klein, Etienne K Papaïx, Julien Sar, Antoine Soubeyrand, Samuel |
author_facet | Roques, Lionel Klein, Etienne K Papaïx, Julien Sar, Antoine Soubeyrand, Samuel |
author_sort | Roques, Lionel |
collection | PubMed |
description | The number of screening tests carried out in France and the methodology used to target the patients tested do not allow for a direct computation of the actual number of cases and the infection fatality ratio (IFR). The main objective of this work is to estimate the actual number of people infected with COVID-19 and to deduce the IFR during the observation window in France. We develop a ‘mechanistic-statistical’ approach coupling a SIR epidemiological model describing the unobserved epidemiological dynamics, a probabilistic model describing the data acquisition process and a statistical inference method. The actual number of infected cases in France is probably higher than the observations: we find here a factor ×8 (95%-CI: 5–12) which leads to an IFR in France of 0.5% (95%-CI: 0.3–0.8) based on hospital death counting data. Adjusting for the number of deaths in nursing homes, we obtain an IFR of 0.8% (95%-CI: 0.45–1.25). This IFR is consistent with previous findings in China (0.66%) and in the UK (0.9%) and lower than the value previously computed on the Diamond Princess cruse ship data (1.3%). |
format | Online Article Text |
id | pubmed-7284549 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-72845492020-06-19 Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France Roques, Lionel Klein, Etienne K Papaïx, Julien Sar, Antoine Soubeyrand, Samuel Biology (Basel) Article The number of screening tests carried out in France and the methodology used to target the patients tested do not allow for a direct computation of the actual number of cases and the infection fatality ratio (IFR). The main objective of this work is to estimate the actual number of people infected with COVID-19 and to deduce the IFR during the observation window in France. We develop a ‘mechanistic-statistical’ approach coupling a SIR epidemiological model describing the unobserved epidemiological dynamics, a probabilistic model describing the data acquisition process and a statistical inference method. The actual number of infected cases in France is probably higher than the observations: we find here a factor ×8 (95%-CI: 5–12) which leads to an IFR in France of 0.5% (95%-CI: 0.3–0.8) based on hospital death counting data. Adjusting for the number of deaths in nursing homes, we obtain an IFR of 0.8% (95%-CI: 0.45–1.25). This IFR is consistent with previous findings in China (0.66%) and in the UK (0.9%) and lower than the value previously computed on the Diamond Princess cruse ship data (1.3%). MDPI 2020-05-08 /pmc/articles/PMC7284549/ /pubmed/32397286 http://dx.doi.org/10.3390/biology9050097 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Roques, Lionel Klein, Etienne K Papaïx, Julien Sar, Antoine Soubeyrand, Samuel Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France |
title | Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France |
title_full | Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France |
title_fullStr | Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France |
title_full_unstemmed | Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France |
title_short | Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France |
title_sort | using early data to estimate the actual infection fatality ratio from covid-19 in france |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284549/ https://www.ncbi.nlm.nih.gov/pubmed/32397286 http://dx.doi.org/10.3390/biology9050097 |
work_keys_str_mv | AT roqueslionel usingearlydatatoestimatetheactualinfectionfatalityratiofromcovid19infrance AT kleinetiennek usingearlydatatoestimatetheactualinfectionfatalityratiofromcovid19infrance AT papaixjulien usingearlydatatoestimatetheactualinfectionfatalityratiofromcovid19infrance AT sarantoine usingearlydatatoestimatetheactualinfectionfatalityratiofromcovid19infrance AT soubeyrandsamuel usingearlydatatoestimatetheactualinfectionfatalityratiofromcovid19infrance |