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Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France

The number of screening tests carried out in France and the methodology used to target the patients tested do not allow for a direct computation of the actual number of cases and the infection fatality ratio (IFR). The main objective of this work is to estimate the actual number of people infected w...

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Autores principales: Roques, Lionel, Klein, Etienne K, Papaïx, Julien, Sar, Antoine, Soubeyrand, Samuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284549/
https://www.ncbi.nlm.nih.gov/pubmed/32397286
http://dx.doi.org/10.3390/biology9050097
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author Roques, Lionel
Klein, Etienne K
Papaïx, Julien
Sar, Antoine
Soubeyrand, Samuel
author_facet Roques, Lionel
Klein, Etienne K
Papaïx, Julien
Sar, Antoine
Soubeyrand, Samuel
author_sort Roques, Lionel
collection PubMed
description The number of screening tests carried out in France and the methodology used to target the patients tested do not allow for a direct computation of the actual number of cases and the infection fatality ratio (IFR). The main objective of this work is to estimate the actual number of people infected with COVID-19 and to deduce the IFR during the observation window in France. We develop a ‘mechanistic-statistical’ approach coupling a SIR epidemiological model describing the unobserved epidemiological dynamics, a probabilistic model describing the data acquisition process and a statistical inference method. The actual number of infected cases in France is probably higher than the observations: we find here a factor ×8 (95%-CI: 5–12) which leads to an IFR in France of 0.5% (95%-CI: 0.3–0.8) based on hospital death counting data. Adjusting for the number of deaths in nursing homes, we obtain an IFR of 0.8% (95%-CI: 0.45–1.25). This IFR is consistent with previous findings in China (0.66%) and in the UK (0.9%) and lower than the value previously computed on the Diamond Princess cruse ship data (1.3%).
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spelling pubmed-72845492020-06-19 Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France Roques, Lionel Klein, Etienne K Papaïx, Julien Sar, Antoine Soubeyrand, Samuel Biology (Basel) Article The number of screening tests carried out in France and the methodology used to target the patients tested do not allow for a direct computation of the actual number of cases and the infection fatality ratio (IFR). The main objective of this work is to estimate the actual number of people infected with COVID-19 and to deduce the IFR during the observation window in France. We develop a ‘mechanistic-statistical’ approach coupling a SIR epidemiological model describing the unobserved epidemiological dynamics, a probabilistic model describing the data acquisition process and a statistical inference method. The actual number of infected cases in France is probably higher than the observations: we find here a factor ×8 (95%-CI: 5–12) which leads to an IFR in France of 0.5% (95%-CI: 0.3–0.8) based on hospital death counting data. Adjusting for the number of deaths in nursing homes, we obtain an IFR of 0.8% (95%-CI: 0.45–1.25). This IFR is consistent with previous findings in China (0.66%) and in the UK (0.9%) and lower than the value previously computed on the Diamond Princess cruse ship data (1.3%). MDPI 2020-05-08 /pmc/articles/PMC7284549/ /pubmed/32397286 http://dx.doi.org/10.3390/biology9050097 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Roques, Lionel
Klein, Etienne K
Papaïx, Julien
Sar, Antoine
Soubeyrand, Samuel
Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France
title Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France
title_full Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France
title_fullStr Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France
title_full_unstemmed Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France
title_short Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France
title_sort using early data to estimate the actual infection fatality ratio from covid-19 in france
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284549/
https://www.ncbi.nlm.nih.gov/pubmed/32397286
http://dx.doi.org/10.3390/biology9050097
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