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Germination Data Analysis by Time-to-Event Approaches

Germination data are analyzed by several methods, which can be mainly classified as germination indexes and traditional regression techniques to fit non-linear parametric functions to the temporal sequence of cumulative germination. However, due to the nature of germination data, often different fro...

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Detalles Bibliográficos
Autores principales: Romano, Alessandro, Stevanato, Piergiorgio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285257/
https://www.ncbi.nlm.nih.gov/pubmed/32408713
http://dx.doi.org/10.3390/plants9050617
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author Romano, Alessandro
Stevanato, Piergiorgio
author_facet Romano, Alessandro
Stevanato, Piergiorgio
author_sort Romano, Alessandro
collection PubMed
description Germination data are analyzed by several methods, which can be mainly classified as germination indexes and traditional regression techniques to fit non-linear parametric functions to the temporal sequence of cumulative germination. However, due to the nature of germination data, often different from other biological data, the abovementioned methods may present some limits, especially when ungerminated seeds are present at the end of an experiment. A class of methods that could allow addressing these issues is represented by the so-called “time-to-event analysis”, better known in other scientific fields as “survival analysis” or “reliability analysis”. There is relatively little literature about the application of these methods to germination data, and some reviews dealt only with parts of the possible approaches such as either non-parametric and semi-parametric or parametric ones. The present study aims to give a contribution to the knowledge about the reliability of these methods by assessing all the main approaches to the same germination data provided by sugar beet (Beta vulgaris L.) seeds cohorts. The results obtained confirmed that although the different approaches present advantages and disadvantages, they could generally represent a valuable tool to analyze germination data providing parameters whose usefulness depends on the purpose of the research.
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spelling pubmed-72852572020-06-17 Germination Data Analysis by Time-to-Event Approaches Romano, Alessandro Stevanato, Piergiorgio Plants (Basel) Article Germination data are analyzed by several methods, which can be mainly classified as germination indexes and traditional regression techniques to fit non-linear parametric functions to the temporal sequence of cumulative germination. However, due to the nature of germination data, often different from other biological data, the abovementioned methods may present some limits, especially when ungerminated seeds are present at the end of an experiment. A class of methods that could allow addressing these issues is represented by the so-called “time-to-event analysis”, better known in other scientific fields as “survival analysis” or “reliability analysis”. There is relatively little literature about the application of these methods to germination data, and some reviews dealt only with parts of the possible approaches such as either non-parametric and semi-parametric or parametric ones. The present study aims to give a contribution to the knowledge about the reliability of these methods by assessing all the main approaches to the same germination data provided by sugar beet (Beta vulgaris L.) seeds cohorts. The results obtained confirmed that although the different approaches present advantages and disadvantages, they could generally represent a valuable tool to analyze germination data providing parameters whose usefulness depends on the purpose of the research. MDPI 2020-05-12 /pmc/articles/PMC7285257/ /pubmed/32408713 http://dx.doi.org/10.3390/plants9050617 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Romano, Alessandro
Stevanato, Piergiorgio
Germination Data Analysis by Time-to-Event Approaches
title Germination Data Analysis by Time-to-Event Approaches
title_full Germination Data Analysis by Time-to-Event Approaches
title_fullStr Germination Data Analysis by Time-to-Event Approaches
title_full_unstemmed Germination Data Analysis by Time-to-Event Approaches
title_short Germination Data Analysis by Time-to-Event Approaches
title_sort germination data analysis by time-to-event approaches
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285257/
https://www.ncbi.nlm.nih.gov/pubmed/32408713
http://dx.doi.org/10.3390/plants9050617
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