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Germination Data Analysis by Time-to-Event Approaches
Germination data are analyzed by several methods, which can be mainly classified as germination indexes and traditional regression techniques to fit non-linear parametric functions to the temporal sequence of cumulative germination. However, due to the nature of germination data, often different fro...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285257/ https://www.ncbi.nlm.nih.gov/pubmed/32408713 http://dx.doi.org/10.3390/plants9050617 |
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author | Romano, Alessandro Stevanato, Piergiorgio |
author_facet | Romano, Alessandro Stevanato, Piergiorgio |
author_sort | Romano, Alessandro |
collection | PubMed |
description | Germination data are analyzed by several methods, which can be mainly classified as germination indexes and traditional regression techniques to fit non-linear parametric functions to the temporal sequence of cumulative germination. However, due to the nature of germination data, often different from other biological data, the abovementioned methods may present some limits, especially when ungerminated seeds are present at the end of an experiment. A class of methods that could allow addressing these issues is represented by the so-called “time-to-event analysis”, better known in other scientific fields as “survival analysis” or “reliability analysis”. There is relatively little literature about the application of these methods to germination data, and some reviews dealt only with parts of the possible approaches such as either non-parametric and semi-parametric or parametric ones. The present study aims to give a contribution to the knowledge about the reliability of these methods by assessing all the main approaches to the same germination data provided by sugar beet (Beta vulgaris L.) seeds cohorts. The results obtained confirmed that although the different approaches present advantages and disadvantages, they could generally represent a valuable tool to analyze germination data providing parameters whose usefulness depends on the purpose of the research. |
format | Online Article Text |
id | pubmed-7285257 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-72852572020-06-17 Germination Data Analysis by Time-to-Event Approaches Romano, Alessandro Stevanato, Piergiorgio Plants (Basel) Article Germination data are analyzed by several methods, which can be mainly classified as germination indexes and traditional regression techniques to fit non-linear parametric functions to the temporal sequence of cumulative germination. However, due to the nature of germination data, often different from other biological data, the abovementioned methods may present some limits, especially when ungerminated seeds are present at the end of an experiment. A class of methods that could allow addressing these issues is represented by the so-called “time-to-event analysis”, better known in other scientific fields as “survival analysis” or “reliability analysis”. There is relatively little literature about the application of these methods to germination data, and some reviews dealt only with parts of the possible approaches such as either non-parametric and semi-parametric or parametric ones. The present study aims to give a contribution to the knowledge about the reliability of these methods by assessing all the main approaches to the same germination data provided by sugar beet (Beta vulgaris L.) seeds cohorts. The results obtained confirmed that although the different approaches present advantages and disadvantages, they could generally represent a valuable tool to analyze germination data providing parameters whose usefulness depends on the purpose of the research. MDPI 2020-05-12 /pmc/articles/PMC7285257/ /pubmed/32408713 http://dx.doi.org/10.3390/plants9050617 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Romano, Alessandro Stevanato, Piergiorgio Germination Data Analysis by Time-to-Event Approaches |
title | Germination Data Analysis by Time-to-Event Approaches |
title_full | Germination Data Analysis by Time-to-Event Approaches |
title_fullStr | Germination Data Analysis by Time-to-Event Approaches |
title_full_unstemmed | Germination Data Analysis by Time-to-Event Approaches |
title_short | Germination Data Analysis by Time-to-Event Approaches |
title_sort | germination data analysis by time-to-event approaches |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285257/ https://www.ncbi.nlm.nih.gov/pubmed/32408713 http://dx.doi.org/10.3390/plants9050617 |
work_keys_str_mv | AT romanoalessandro germinationdataanalysisbytimetoeventapproaches AT stevanatopiergiorgio germinationdataanalysisbytimetoeventapproaches |