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Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women

BACKGROUND: Group B Streptococcus (GBS) is the leading cause of invasive neonatal infection. In this study, we aimed to evaluate the analytical validation of qualitative real-time polymerase chain reaction (qPCR) as a means to detect GBS. METHODS: Genomic DNA (gDNA) was purified from 12 ATCC bacteri...

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Autores principales: Escobar, Daniel F., Diaz-Dinamarca, Diego A., Hernández, Carlos F., Soto, Daniel A., Manzo, Ricardo A., Alarcón, Pedro I., Pinto, Camila H., Bastias, Diego N., Oberg-Bravo, Carolayn N., Rojas, Robert, Illanes, Sebastián E., Kalergis, Alexis M., Vasquez, Abel E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285471/
https://www.ncbi.nlm.nih.gov/pubmed/32517670
http://dx.doi.org/10.1186/s12884-020-03038-z
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author Escobar, Daniel F.
Diaz-Dinamarca, Diego A.
Hernández, Carlos F.
Soto, Daniel A.
Manzo, Ricardo A.
Alarcón, Pedro I.
Pinto, Camila H.
Bastias, Diego N.
Oberg-Bravo, Carolayn N.
Rojas, Robert
Illanes, Sebastián E.
Kalergis, Alexis M.
Vasquez, Abel E.
author_facet Escobar, Daniel F.
Diaz-Dinamarca, Diego A.
Hernández, Carlos F.
Soto, Daniel A.
Manzo, Ricardo A.
Alarcón, Pedro I.
Pinto, Camila H.
Bastias, Diego N.
Oberg-Bravo, Carolayn N.
Rojas, Robert
Illanes, Sebastián E.
Kalergis, Alexis M.
Vasquez, Abel E.
author_sort Escobar, Daniel F.
collection PubMed
description BACKGROUND: Group B Streptococcus (GBS) is the leading cause of invasive neonatal infection. In this study, we aimed to evaluate the analytical validation of qualitative real-time polymerase chain reaction (qPCR) as a means to detect GBS. METHODS: Genomic DNA (gDNA) was purified from 12 ATCC bacterial strains, two belonging to GBS and the remainder acting as negative controls. Additionally, gDNA was isolated from 21 strains of GBS from various serotypes (Ia, Ib and II-VIII). All gDNA was used to evaluate the analytical validation of the qPCR method employing a specific Taqman probe. Inclusivity, exclusivity, anticipated reportable range, the limit of detection and robustness were evaluated. The methods used are described in international guidelines and other existing reports. The performance of this qPCR method for detecting GBS was compared to other microbiological methods used with vaginal-rectal samples from pregnant women. RESULTS: Our qPCR method for detecting GBS was analytically validated. It has a limit of detection of 0.7 GE/μL and 100% analytical specificity. It detects all strains of GBS with the same level of performance as microbiological methods. CONCLUSION: Data suggest that this qPCR method performs adequately as a means to detect GBS in vaginal-rectal swabs from pregnant women.
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spelling pubmed-72854712020-06-10 Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women Escobar, Daniel F. Diaz-Dinamarca, Diego A. Hernández, Carlos F. Soto, Daniel A. Manzo, Ricardo A. Alarcón, Pedro I. Pinto, Camila H. Bastias, Diego N. Oberg-Bravo, Carolayn N. Rojas, Robert Illanes, Sebastián E. Kalergis, Alexis M. Vasquez, Abel E. BMC Pregnancy Childbirth Research Article BACKGROUND: Group B Streptococcus (GBS) is the leading cause of invasive neonatal infection. In this study, we aimed to evaluate the analytical validation of qualitative real-time polymerase chain reaction (qPCR) as a means to detect GBS. METHODS: Genomic DNA (gDNA) was purified from 12 ATCC bacterial strains, two belonging to GBS and the remainder acting as negative controls. Additionally, gDNA was isolated from 21 strains of GBS from various serotypes (Ia, Ib and II-VIII). All gDNA was used to evaluate the analytical validation of the qPCR method employing a specific Taqman probe. Inclusivity, exclusivity, anticipated reportable range, the limit of detection and robustness were evaluated. The methods used are described in international guidelines and other existing reports. The performance of this qPCR method for detecting GBS was compared to other microbiological methods used with vaginal-rectal samples from pregnant women. RESULTS: Our qPCR method for detecting GBS was analytically validated. It has a limit of detection of 0.7 GE/μL and 100% analytical specificity. It detects all strains of GBS with the same level of performance as microbiological methods. CONCLUSION: Data suggest that this qPCR method performs adequately as a means to detect GBS in vaginal-rectal swabs from pregnant women. BioMed Central 2020-06-09 /pmc/articles/PMC7285471/ /pubmed/32517670 http://dx.doi.org/10.1186/s12884-020-03038-z Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Escobar, Daniel F.
Diaz-Dinamarca, Diego A.
Hernández, Carlos F.
Soto, Daniel A.
Manzo, Ricardo A.
Alarcón, Pedro I.
Pinto, Camila H.
Bastias, Diego N.
Oberg-Bravo, Carolayn N.
Rojas, Robert
Illanes, Sebastián E.
Kalergis, Alexis M.
Vasquez, Abel E.
Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women
title Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women
title_full Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women
title_fullStr Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women
title_full_unstemmed Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women
title_short Development and analytical validation of real-time PCR for the detection of Streptococcus agalactiae in pregnant women
title_sort development and analytical validation of real-time pcr for the detection of streptococcus agalactiae in pregnant women
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285471/
https://www.ncbi.nlm.nih.gov/pubmed/32517670
http://dx.doi.org/10.1186/s12884-020-03038-z
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