Cargando…
Interpretable brain age prediction using linear latent variable models of functional connectivity
Neuroimaging-driven prediction of brain age, defined as the predicted biological age of a subject using only brain imaging data, is an exciting avenue of research. In this work we seek to build models of brain age based on functional connectivity while prioritizing model interpretability and underst...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7286502/ https://www.ncbi.nlm.nih.gov/pubmed/32520931 http://dx.doi.org/10.1371/journal.pone.0232296 |
_version_ | 1783544890804666368 |
---|---|
author | Monti, Ricardo Pio Gibberd, Alex Roy, Sandipan Nunes, Matthew Lorenz, Romy Leech, Robert Ogawa, Takeshi Kawanabe, Motoaki Hyvärinen, Aapo |
author_facet | Monti, Ricardo Pio Gibberd, Alex Roy, Sandipan Nunes, Matthew Lorenz, Romy Leech, Robert Ogawa, Takeshi Kawanabe, Motoaki Hyvärinen, Aapo |
author_sort | Monti, Ricardo Pio |
collection | PubMed |
description | Neuroimaging-driven prediction of brain age, defined as the predicted biological age of a subject using only brain imaging data, is an exciting avenue of research. In this work we seek to build models of brain age based on functional connectivity while prioritizing model interpretability and understanding. This way, the models serve to both provide accurate estimates of brain age as well as allow us to investigate changes in functional connectivity which occur during the ageing process. The methods proposed in this work consist of a two-step procedure: first, linear latent variable models, such as PCA and its extensions, are employed to learn reproducible functional connectivity networks present across a cohort of subjects. The activity within each network is subsequently employed as a feature in a linear regression model to predict brain age. The proposed framework is employed on the data from the CamCAN repository and the inferred brain age models are further demonstrated to generalize using data from two open-access repositories: the Human Connectome Project and the ATR Wide-Age-Range. |
format | Online Article Text |
id | pubmed-7286502 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-72865022020-06-17 Interpretable brain age prediction using linear latent variable models of functional connectivity Monti, Ricardo Pio Gibberd, Alex Roy, Sandipan Nunes, Matthew Lorenz, Romy Leech, Robert Ogawa, Takeshi Kawanabe, Motoaki Hyvärinen, Aapo PLoS One Research Article Neuroimaging-driven prediction of brain age, defined as the predicted biological age of a subject using only brain imaging data, is an exciting avenue of research. In this work we seek to build models of brain age based on functional connectivity while prioritizing model interpretability and understanding. This way, the models serve to both provide accurate estimates of brain age as well as allow us to investigate changes in functional connectivity which occur during the ageing process. The methods proposed in this work consist of a two-step procedure: first, linear latent variable models, such as PCA and its extensions, are employed to learn reproducible functional connectivity networks present across a cohort of subjects. The activity within each network is subsequently employed as a feature in a linear regression model to predict brain age. The proposed framework is employed on the data from the CamCAN repository and the inferred brain age models are further demonstrated to generalize using data from two open-access repositories: the Human Connectome Project and the ATR Wide-Age-Range. Public Library of Science 2020-06-10 /pmc/articles/PMC7286502/ /pubmed/32520931 http://dx.doi.org/10.1371/journal.pone.0232296 Text en © 2020 Monti et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Monti, Ricardo Pio Gibberd, Alex Roy, Sandipan Nunes, Matthew Lorenz, Romy Leech, Robert Ogawa, Takeshi Kawanabe, Motoaki Hyvärinen, Aapo Interpretable brain age prediction using linear latent variable models of functional connectivity |
title | Interpretable brain age prediction using linear latent variable models of functional connectivity |
title_full | Interpretable brain age prediction using linear latent variable models of functional connectivity |
title_fullStr | Interpretable brain age prediction using linear latent variable models of functional connectivity |
title_full_unstemmed | Interpretable brain age prediction using linear latent variable models of functional connectivity |
title_short | Interpretable brain age prediction using linear latent variable models of functional connectivity |
title_sort | interpretable brain age prediction using linear latent variable models of functional connectivity |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7286502/ https://www.ncbi.nlm.nih.gov/pubmed/32520931 http://dx.doi.org/10.1371/journal.pone.0232296 |
work_keys_str_mv | AT montiricardopio interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT gibberdalex interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT roysandipan interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT nunesmatthew interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT lorenzromy interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT leechrobert interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT ogawatakeshi interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT kawanabemotoaki interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity AT hyvarinenaapo interpretablebrainagepredictionusinglinearlatentvariablemodelsoffunctionalconnectivity |