Cargando…

Whole genome sequence analysis reveals genetic structure and X-chromosome haplotype structure in indigenous Chinese pigs

Chinese indigenous pigs exhibit considerable phenotypic diversity, but their population structure and the genetic basis of agriculturally important traits need further exploration. Here, we sequenced the whole genomes of 24 individual pigs representing 22 breeds distributed throughout China. For com...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tong, Xiong, Hou, Lianjie, He, Weiming, Mei, Chugang, Huang, Bo, Zhang, Chi, Hu, Chingyuan, Wang, Chong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7286894/ https://www.ncbi.nlm.nih.gov/pubmed/32523001 http://dx.doi.org/10.1038/s41598-020-66061-2

Ejemplares similares

Exploring the Structure of Haplotype Blocks and Genetic Diversity in Chinese Indigenous Pig Populations for Conservation Purpose
por: Zhao, Qing-bo, et al.
Publicado: (2019)

Recombinational landscape of porcine X chromosome and individual variation in female meiotic recombination associated with haplotypes of Chinese pigs
por: Ma, Junwu, et al.
Publicado: (2010)

The pig X and Y Chromosomes: structure, sequence, and evolution
por: Skinner, Benjamin M., et al.
Publicado: (2016)

The fine‐scale genetic structure and selection signals of Chinese indigenous pigs
por: Huang, Min, et al.
Publicado: (2019)

Chromosomal profile of indigenous pig (Sus scrofa)
por: Vishnu, P. Guru, et al.
Publicado: (2015)

Genetic variation and relationships of eighteen Chinese indigenous pig breeds
por: Yang, Shu-Lin, et al.
Publicado: (2003)

MiR-34c represses muscle development by forming a regulatory loop with Notch1
por: Hou, Lianjie, et al.
Publicado: (2017)

Dense and accurate whole-chromosome haplotyping of individual genomes
por: Porubsky, David, et al.
Publicado: (2017)

Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages
por: Marroni, Fabio, et al.
Publicado: (2005)

Comparative Analysis of Structural Composition and Function of Intestinal Microbiota between Chinese Indigenous Laiwu Pigs and Commercial DLY Pigs
por: Li, Chao, et al.
Publicado: (2023)

Whole‐genome analysis reveals the hybrid formation of Chinese indigenous DHB pig following human migration
por: Wang, Yuzhan, et al.
Publicado: (2022)

Introgression of Chinese haplotypes contributed to the improvement of Danish Duroc pigs
por: Chen, Minhui, et al.
Publicado: (2018)

Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers
por: Nadachowska‐Brzyska, Krystyna, et al.
Publicado: (2019)

Genetic variation and genetic structure of five Chinese indigenous pig populations in Jiangsu Province revealed by sequencing data
por: Xiao, Q., et al.
Publicado: (2017)

Introgression of Eastern Chinese and Southern Chinese haplotypes contributes to the improvement of fertility and immunity in European modern pigs
por: Chen, Hao, et al.
Publicado: (2020)

Transcriptomic Profiling of Meat Quality Traits of Skeletal Muscles of the Chinese Indigenous Huai Pig and Duroc Pig
por: Li, Xiaojin, et al.
Publicado: (2023)

Remarks on Identification of X chromosome in Pig
por: Sysa, P
Publicado: (1977)

Genetic diversity and population structure of six Chinese indigenous pig breeds in the Taihu Lake region revealed by sequencing data
por: Wang, Z., et al.
Publicado: (2015)

Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1
por: Bosse, Mirte, et al.
Publicado: (2015)

Haplotypes on pig chromosome 3 distinguish metabolically healthy from unhealthy obese individuals
por: Frederiksen, Simona D., et al.
Publicado: (2017)

Genomic mating as sustainable breeding for Chinese indigenous Ningxiang pigs
por: He, Jun, et al.
Publicado: (2020)

Detection of genomic structural variations in Guizhou indigenous pigs and the comparison with other breeds
por: Liu, Chang, et al.
Publicado: (2018)

Evaluation of the genetic structure of indigenous Okinawa Agu pigs using microsatellite markers
por: Touma, Shihei, et al.
Publicado: (2020)

Structural aspects of the inactive X chromosome
por: Bonora, Giancarlo, et al.
Publicado: (2017)

Detection of copy number variation and selection signatures on the X chromosome in Chinese indigenous sheep with different types of tail
por: Zhu, Caiye, et al.
Publicado: (2020)

Haplotypic polymorphisms and mutation rate estimates of 22 Y-chromosome STRs in the Northern Chinese Han father–son pairs
por: Yang, Yaran, et al.
Publicado: (2018)

Population Structure and Selection Signatures Underlying Domestication Inferred from Genome-Wide Copy Number Variations in Chinese Indigenous Pigs
por: Zhang, Wei, et al.
Publicado: (2022)

Identification of Selection Footprints on the X Chromosome in Pig
por: Ma, Yunlong, et al.
Publicado: (2014)

Haplotype and population structure inference using neural networks in whole-genome sequencing data
por: Meisner, Jonas, et al.
Publicado: (2022)

Bipartite structure of the inactive mouse X chromosome
por: Deng, Xinxian, et al.
Publicado: (2015)

Current genetic conservation of Chinese indigenous horses revealed with Y-chromosomal and mitochondrial DNA polymorphisms
por: Liu, Shuqin, et al.
Publicado: (2021)

PRDM16 Represses the Pig White Lipogenesis through Promoting Lipolysis Activity
por: Gu, Ting, et al.
Publicado: (2019)

Genetic variations of the porcine PRKAG3 gene in Chinese indigenous pig breeds
por: Huang, Lu-Sheng, et al.
Publicado: (2004)

Conservation Priorities Analysis of Chinese Indigenous Pig Breeds in the Taihu Lake Region
por: Zhao, Qing-bo, et al.
Publicado: (2021)

Inferring the three-dimensional structures of the X-chromosome during X-inactivation
por: Zhu, Hao, et al.
Publicado: (2019)

Genetic Structure and Forensic Feature of 38 X-Chromosome InDels in the Henan Han Chinese Population
por: Zhang, Lin, et al.
Publicado: (2022)

Evaluation of Linkage Disequilibrium, Effective Population Size and Haplotype Block Structure in Chinese Cattle
por: Xu, Lei, et al.
Publicado: (2019)

Detecting Structure of Haplotypes and Local Ancestry
por: Guan, Yongtao
Publicado: (2014)

Identification of the X chromosome of the domestic pig (Sus scrofa domestica)
por: Hansen, KM
Publicado: (1980)

iHAP – integrated haplotype analysis pipeline for characterizing the haplotype structure of genes
por: Song, Chun Meng, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_h1918ffa4169rp5h47t4fcsbn0