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Big knowledge from big data in functional genomics
With so much genomics data being produced, it might be wise to pause and consider what purpose this data can or should serve. Some improve annotations, others predict molecular interactions, but few add directly to existing knowledge. This is because sequence annotations do not always implicate func...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Portland Press Ltd.
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7288990/ https://www.ncbi.nlm.nih.gov/pubmed/33525805 http://dx.doi.org/10.1042/ETLS20170129 |
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author | Ponting, Chris P. |
author_facet | Ponting, Chris P. |
author_sort | Ponting, Chris P. |
collection | PubMed |
description | With so much genomics data being produced, it might be wise to pause and consider what purpose this data can or should serve. Some improve annotations, others predict molecular interactions, but few add directly to existing knowledge. This is because sequence annotations do not always implicate function, and molecular interactions are often irrelevant to a cell's or organism's survival or propagation. Merely correlative relationships found in big data fail to provide answers to the Why questions of human biology. Instead, those answers are expected from methods that causally link DNA changes to downstream effects without being confounded by reverse causation. These approaches require the controlled measurement of the consequences of DNA variants, for example, either those introduced in single cells using CRISPR/Cas9 genome editing or that are already present across the human population. Inferred causal relationships between genetic variation and cellular phenotypes or disease show promise to rapidly grow and underpin our knowledge base. |
format | Online Article Text |
id | pubmed-7288990 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72889902020-06-18 Big knowledge from big data in functional genomics Ponting, Chris P. Emerg Top Life Sci Commentaries With so much genomics data being produced, it might be wise to pause and consider what purpose this data can or should serve. Some improve annotations, others predict molecular interactions, but few add directly to existing knowledge. This is because sequence annotations do not always implicate function, and molecular interactions are often irrelevant to a cell's or organism's survival or propagation. Merely correlative relationships found in big data fail to provide answers to the Why questions of human biology. Instead, those answers are expected from methods that causally link DNA changes to downstream effects without being confounded by reverse causation. These approaches require the controlled measurement of the consequences of DNA variants, for example, either those introduced in single cells using CRISPR/Cas9 genome editing or that are already present across the human population. Inferred causal relationships between genetic variation and cellular phenotypes or disease show promise to rapidly grow and underpin our knowledge base. Portland Press Ltd. 2017-11-14 2017-11-14 /pmc/articles/PMC7288990/ /pubmed/33525805 http://dx.doi.org/10.1042/ETLS20170129 Text en © 2017 The Author(s) https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and the Royal Society of Biology and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Commentaries Ponting, Chris P. Big knowledge from big data in functional genomics |
title | Big knowledge from big data in functional genomics |
title_full | Big knowledge from big data in functional genomics |
title_fullStr | Big knowledge from big data in functional genomics |
title_full_unstemmed | Big knowledge from big data in functional genomics |
title_short | Big knowledge from big data in functional genomics |
title_sort | big knowledge from big data in functional genomics |
topic | Commentaries |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7288990/ https://www.ncbi.nlm.nih.gov/pubmed/33525805 http://dx.doi.org/10.1042/ETLS20170129 |
work_keys_str_mv | AT pontingchrisp bigknowledgefrombigdatainfunctionalgenomics |