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Genomic Origin and Diversification of the Glucosinolate MAM Locus

Glucosinolates are a diverse group of plant metabolites that characterize the order Brassicales. The MAM locus is one of the most significant QTLs for glucosinolate diversity. However, most of what we understand about evolution at the locus is focused on only a few species and not within a phylogene...

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Autores principales: Abrahams, R. Shawn, Pires, J. Chris, Schranz, M. Eric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289053/
https://www.ncbi.nlm.nih.gov/pubmed/32582245
http://dx.doi.org/10.3389/fpls.2020.00711
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author Abrahams, R. Shawn
Pires, J. Chris
Schranz, M. Eric
author_facet Abrahams, R. Shawn
Pires, J. Chris
Schranz, M. Eric
author_sort Abrahams, R. Shawn
collection PubMed
description Glucosinolates are a diverse group of plant metabolites that characterize the order Brassicales. The MAM locus is one of the most significant QTLs for glucosinolate diversity. However, most of what we understand about evolution at the locus is focused on only a few species and not within a phylogenetic context. In this study, we utilize a micro-synteny network and phylogenetic inference to investigate the origin and diversification of the MAM/IPMS gene family. We uncover unique MAM-like genes found at the orthologous locus in the Cleomaceae that shed light on the transition from IPMS to MAM. In the Brassicaceae, we identify six distinct MAM clades across Lineages I, II, and III. We characterize the evolutionary impact and consequences of local duplications, transpositions, whole genome duplications, and gene fusion events, generating several new hypothesizes on the function and diversity of the MAM locus.
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spelling pubmed-72890532020-06-23 Genomic Origin and Diversification of the Glucosinolate MAM Locus Abrahams, R. Shawn Pires, J. Chris Schranz, M. Eric Front Plant Sci Plant Science Glucosinolates are a diverse group of plant metabolites that characterize the order Brassicales. The MAM locus is one of the most significant QTLs for glucosinolate diversity. However, most of what we understand about evolution at the locus is focused on only a few species and not within a phylogenetic context. In this study, we utilize a micro-synteny network and phylogenetic inference to investigate the origin and diversification of the MAM/IPMS gene family. We uncover unique MAM-like genes found at the orthologous locus in the Cleomaceae that shed light on the transition from IPMS to MAM. In the Brassicaceae, we identify six distinct MAM clades across Lineages I, II, and III. We characterize the evolutionary impact and consequences of local duplications, transpositions, whole genome duplications, and gene fusion events, generating several new hypothesizes on the function and diversity of the MAM locus. Frontiers Media S.A. 2020-06-04 /pmc/articles/PMC7289053/ /pubmed/32582245 http://dx.doi.org/10.3389/fpls.2020.00711 Text en Copyright © 2020 Abrahams, Pires and Schranz. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Abrahams, R. Shawn
Pires, J. Chris
Schranz, M. Eric
Genomic Origin and Diversification of the Glucosinolate MAM Locus
title Genomic Origin and Diversification of the Glucosinolate MAM Locus
title_full Genomic Origin and Diversification of the Glucosinolate MAM Locus
title_fullStr Genomic Origin and Diversification of the Glucosinolate MAM Locus
title_full_unstemmed Genomic Origin and Diversification of the Glucosinolate MAM Locus
title_short Genomic Origin and Diversification of the Glucosinolate MAM Locus
title_sort genomic origin and diversification of the glucosinolate mam locus
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289053/
https://www.ncbi.nlm.nih.gov/pubmed/32582245
http://dx.doi.org/10.3389/fpls.2020.00711
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