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Genomic Origin and Diversification of the Glucosinolate MAM Locus
Glucosinolates are a diverse group of plant metabolites that characterize the order Brassicales. The MAM locus is one of the most significant QTLs for glucosinolate diversity. However, most of what we understand about evolution at the locus is focused on only a few species and not within a phylogene...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289053/ https://www.ncbi.nlm.nih.gov/pubmed/32582245 http://dx.doi.org/10.3389/fpls.2020.00711 |
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author | Abrahams, R. Shawn Pires, J. Chris Schranz, M. Eric |
author_facet | Abrahams, R. Shawn Pires, J. Chris Schranz, M. Eric |
author_sort | Abrahams, R. Shawn |
collection | PubMed |
description | Glucosinolates are a diverse group of plant metabolites that characterize the order Brassicales. The MAM locus is one of the most significant QTLs for glucosinolate diversity. However, most of what we understand about evolution at the locus is focused on only a few species and not within a phylogenetic context. In this study, we utilize a micro-synteny network and phylogenetic inference to investigate the origin and diversification of the MAM/IPMS gene family. We uncover unique MAM-like genes found at the orthologous locus in the Cleomaceae that shed light on the transition from IPMS to MAM. In the Brassicaceae, we identify six distinct MAM clades across Lineages I, II, and III. We characterize the evolutionary impact and consequences of local duplications, transpositions, whole genome duplications, and gene fusion events, generating several new hypothesizes on the function and diversity of the MAM locus. |
format | Online Article Text |
id | pubmed-7289053 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72890532020-06-23 Genomic Origin and Diversification of the Glucosinolate MAM Locus Abrahams, R. Shawn Pires, J. Chris Schranz, M. Eric Front Plant Sci Plant Science Glucosinolates are a diverse group of plant metabolites that characterize the order Brassicales. The MAM locus is one of the most significant QTLs for glucosinolate diversity. However, most of what we understand about evolution at the locus is focused on only a few species and not within a phylogenetic context. In this study, we utilize a micro-synteny network and phylogenetic inference to investigate the origin and diversification of the MAM/IPMS gene family. We uncover unique MAM-like genes found at the orthologous locus in the Cleomaceae that shed light on the transition from IPMS to MAM. In the Brassicaceae, we identify six distinct MAM clades across Lineages I, II, and III. We characterize the evolutionary impact and consequences of local duplications, transpositions, whole genome duplications, and gene fusion events, generating several new hypothesizes on the function and diversity of the MAM locus. Frontiers Media S.A. 2020-06-04 /pmc/articles/PMC7289053/ /pubmed/32582245 http://dx.doi.org/10.3389/fpls.2020.00711 Text en Copyright © 2020 Abrahams, Pires and Schranz. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Abrahams, R. Shawn Pires, J. Chris Schranz, M. Eric Genomic Origin and Diversification of the Glucosinolate MAM Locus |
title | Genomic Origin and Diversification of the Glucosinolate MAM Locus |
title_full | Genomic Origin and Diversification of the Glucosinolate MAM Locus |
title_fullStr | Genomic Origin and Diversification of the Glucosinolate MAM Locus |
title_full_unstemmed | Genomic Origin and Diversification of the Glucosinolate MAM Locus |
title_short | Genomic Origin and Diversification of the Glucosinolate MAM Locus |
title_sort | genomic origin and diversification of the glucosinolate mam locus |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289053/ https://www.ncbi.nlm.nih.gov/pubmed/32582245 http://dx.doi.org/10.3389/fpls.2020.00711 |
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