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Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population
AIM: To investigate the variations and the frequencies of the SLCO1B1 gene in the Thai population. METHODS: Collected samples were categorized into five regions of Thailand. DNA samples were genotyped for two variants, c.388A>G and c.521T>C of the SLCO1B1, using TaqMan(®) real-time PCR. RESULT...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289979/ https://www.ncbi.nlm.nih.gov/pubmed/32581780 http://dx.doi.org/10.3389/fphar.2020.00728 |
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author | Na nakorn, Chalitpon Waisayarat, Jariya Dejthevaporn, Charungthai Srisawasdi, Pornpen Wongwaisayawan, Sansanee Sukasem, Chonlaphat |
author_facet | Na nakorn, Chalitpon Waisayarat, Jariya Dejthevaporn, Charungthai Srisawasdi, Pornpen Wongwaisayawan, Sansanee Sukasem, Chonlaphat |
author_sort | Na nakorn, Chalitpon |
collection | PubMed |
description | AIM: To investigate the variations and the frequencies of the SLCO1B1 gene in the Thai population. METHODS: Collected samples were categorized into five regions of Thailand. DNA samples were genotyped for two variants, c.388A>G and c.521T>C of the SLCO1B1, using TaqMan(®) real-time PCR. RESULTS: The minor allele frequencies (MAFs) of two single nucleotide polymorphisms (SNPs) were not significantly different among the five regions. The most frequent haplotype was SLCO1B1*1b (frequency: 0.654), followed by *1a (frequency: 0.217), *15 (frequency: 0.128), and *5 (frequency: 0.001). We observed a similar frequency of OATP1B1 transporter phenotypes compared to other populations. 75.85% of the Thai subjects showed normal OATP1B1 activity, 22.5% showed intermediate OATP1B1 activity, and 1.58% showed low OATP1B1 activity. CONCLUSION: This study reported the frequencies of the SLCO1B1 variants and the subsequent OATP1B1 activity in a large cohort of Thais that can provide important information for the guidance of personalized drug therapy. |
format | Online Article Text |
id | pubmed-7289979 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72899792020-06-23 Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population Na nakorn, Chalitpon Waisayarat, Jariya Dejthevaporn, Charungthai Srisawasdi, Pornpen Wongwaisayawan, Sansanee Sukasem, Chonlaphat Front Pharmacol Pharmacology AIM: To investigate the variations and the frequencies of the SLCO1B1 gene in the Thai population. METHODS: Collected samples were categorized into five regions of Thailand. DNA samples were genotyped for two variants, c.388A>G and c.521T>C of the SLCO1B1, using TaqMan(®) real-time PCR. RESULTS: The minor allele frequencies (MAFs) of two single nucleotide polymorphisms (SNPs) were not significantly different among the five regions. The most frequent haplotype was SLCO1B1*1b (frequency: 0.654), followed by *1a (frequency: 0.217), *15 (frequency: 0.128), and *5 (frequency: 0.001). We observed a similar frequency of OATP1B1 transporter phenotypes compared to other populations. 75.85% of the Thai subjects showed normal OATP1B1 activity, 22.5% showed intermediate OATP1B1 activity, and 1.58% showed low OATP1B1 activity. CONCLUSION: This study reported the frequencies of the SLCO1B1 variants and the subsequent OATP1B1 activity in a large cohort of Thais that can provide important information for the guidance of personalized drug therapy. Frontiers Media S.A. 2020-06-05 /pmc/articles/PMC7289979/ /pubmed/32581780 http://dx.doi.org/10.3389/fphar.2020.00728 Text en Copyright © 2020 Na nakorn, Waisayarat, Dejthevaporn, Srisawasdi, Wongwaisayawan and Sukasem http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Na nakorn, Chalitpon Waisayarat, Jariya Dejthevaporn, Charungthai Srisawasdi, Pornpen Wongwaisayawan, Sansanee Sukasem, Chonlaphat Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population |
title | Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population |
title_full | Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population |
title_fullStr | Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population |
title_full_unstemmed | Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population |
title_short | Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population |
title_sort | genetic variations and frequencies of the two functional single nucleotide polymorphisms of slco1b1 in the thai population |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289979/ https://www.ncbi.nlm.nih.gov/pubmed/32581780 http://dx.doi.org/10.3389/fphar.2020.00728 |
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