Cargando…

Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population

AIM: To investigate the variations and the frequencies of the SLCO1B1 gene in the Thai population. METHODS: Collected samples were categorized into five regions of Thailand. DNA samples were genotyped for two variants, c.388A>G and c.521T>C of the SLCO1B1, using TaqMan(®) real-time PCR. RESULT...

Descripción completa

Detalles Bibliográficos
Autores principales: Na nakorn, Chalitpon, Waisayarat, Jariya, Dejthevaporn, Charungthai, Srisawasdi, Pornpen, Wongwaisayawan, Sansanee, Sukasem, Chonlaphat
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289979/
https://www.ncbi.nlm.nih.gov/pubmed/32581780
http://dx.doi.org/10.3389/fphar.2020.00728
_version_ 1783545572393746432
author Na nakorn, Chalitpon
Waisayarat, Jariya
Dejthevaporn, Charungthai
Srisawasdi, Pornpen
Wongwaisayawan, Sansanee
Sukasem, Chonlaphat
author_facet Na nakorn, Chalitpon
Waisayarat, Jariya
Dejthevaporn, Charungthai
Srisawasdi, Pornpen
Wongwaisayawan, Sansanee
Sukasem, Chonlaphat
author_sort Na nakorn, Chalitpon
collection PubMed
description AIM: To investigate the variations and the frequencies of the SLCO1B1 gene in the Thai population. METHODS: Collected samples were categorized into five regions of Thailand. DNA samples were genotyped for two variants, c.388A>G and c.521T>C of the SLCO1B1, using TaqMan(®) real-time PCR. RESULTS: The minor allele frequencies (MAFs) of two single nucleotide polymorphisms (SNPs) were not significantly different among the five regions. The most frequent haplotype was SLCO1B1*1b (frequency: 0.654), followed by *1a (frequency: 0.217), *15 (frequency: 0.128), and *5 (frequency: 0.001). We observed a similar frequency of OATP1B1 transporter phenotypes compared to other populations. 75.85% of the Thai subjects showed normal OATP1B1 activity, 22.5% showed intermediate OATP1B1 activity, and 1.58% showed low OATP1B1 activity. CONCLUSION: This study reported the frequencies of the SLCO1B1 variants and the subsequent OATP1B1 activity in a large cohort of Thais that can provide important information for the guidance of personalized drug therapy.
format Online
Article
Text
id pubmed-7289979
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-72899792020-06-23 Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population Na nakorn, Chalitpon Waisayarat, Jariya Dejthevaporn, Charungthai Srisawasdi, Pornpen Wongwaisayawan, Sansanee Sukasem, Chonlaphat Front Pharmacol Pharmacology AIM: To investigate the variations and the frequencies of the SLCO1B1 gene in the Thai population. METHODS: Collected samples were categorized into five regions of Thailand. DNA samples were genotyped for two variants, c.388A>G and c.521T>C of the SLCO1B1, using TaqMan(®) real-time PCR. RESULTS: The minor allele frequencies (MAFs) of two single nucleotide polymorphisms (SNPs) were not significantly different among the five regions. The most frequent haplotype was SLCO1B1*1b (frequency: 0.654), followed by *1a (frequency: 0.217), *15 (frequency: 0.128), and *5 (frequency: 0.001). We observed a similar frequency of OATP1B1 transporter phenotypes compared to other populations. 75.85% of the Thai subjects showed normal OATP1B1 activity, 22.5% showed intermediate OATP1B1 activity, and 1.58% showed low OATP1B1 activity. CONCLUSION: This study reported the frequencies of the SLCO1B1 variants and the subsequent OATP1B1 activity in a large cohort of Thais that can provide important information for the guidance of personalized drug therapy. Frontiers Media S.A. 2020-06-05 /pmc/articles/PMC7289979/ /pubmed/32581780 http://dx.doi.org/10.3389/fphar.2020.00728 Text en Copyright © 2020 Na nakorn, Waisayarat, Dejthevaporn, Srisawasdi, Wongwaisayawan and Sukasem http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Na nakorn, Chalitpon
Waisayarat, Jariya
Dejthevaporn, Charungthai
Srisawasdi, Pornpen
Wongwaisayawan, Sansanee
Sukasem, Chonlaphat
Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population
title Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population
title_full Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population
title_fullStr Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population
title_full_unstemmed Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population
title_short Genetic Variations and Frequencies of the Two Functional Single Nucleotide Polymorphisms of SLCO1B1 in the Thai Population
title_sort genetic variations and frequencies of the two functional single nucleotide polymorphisms of slco1b1 in the thai population
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289979/
https://www.ncbi.nlm.nih.gov/pubmed/32581780
http://dx.doi.org/10.3389/fphar.2020.00728
work_keys_str_mv AT nanakornchalitpon geneticvariationsandfrequenciesofthetwofunctionalsinglenucleotidepolymorphismsofslco1b1inthethaipopulation
AT waisayaratjariya geneticvariationsandfrequenciesofthetwofunctionalsinglenucleotidepolymorphismsofslco1b1inthethaipopulation
AT dejthevaporncharungthai geneticvariationsandfrequenciesofthetwofunctionalsinglenucleotidepolymorphismsofslco1b1inthethaipopulation
AT srisawasdipornpen geneticvariationsandfrequenciesofthetwofunctionalsinglenucleotidepolymorphismsofslco1b1inthethaipopulation
AT wongwaisayawansansanee geneticvariationsandfrequenciesofthetwofunctionalsinglenucleotidepolymorphismsofslco1b1inthethaipopulation
AT sukasemchonlaphat geneticvariationsandfrequenciesofthetwofunctionalsinglenucleotidepolymorphismsofslco1b1inthethaipopulation