SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise

Japan has reported 26 cases of coronavirus disease 2019 (COVID-19) linked to cruise tours on the River Nile in Egypt between March 5 and 15, 2020. Here, we characterized the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome of isolates from 10 travelers who returned from Egypt and...

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Autores principales: Sekizuka, Tsuyoshi, Kuramoto, Sanae, Nariai, Eri, Taira, Masakatsu, Hachisu, Yushi, Tokaji, Akihiko, Shinohara, Michiyo, Kishimoto, Tsuyoshi, Itokawa, Kentaro, Kobayashi, Yusuke, Kadokura, Keisuke, Kamiya, Hajime, Matsui, Tamano, Suzuki, Motoi, Kuroda, Makoto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7291780/
https://www.ncbi.nlm.nih.gov/pubmed/32582136
http://dx.doi.org/10.3389/fmicb.2020.01316
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author Sekizuka, Tsuyoshi
Kuramoto, Sanae
Nariai, Eri
Taira, Masakatsu
Hachisu, Yushi
Tokaji, Akihiko
Shinohara, Michiyo
Kishimoto, Tsuyoshi
Itokawa, Kentaro
Kobayashi, Yusuke
Kadokura, Keisuke
Kamiya, Hajime
Matsui, Tamano
Suzuki, Motoi
Kuroda, Makoto
author_facet Sekizuka, Tsuyoshi
Kuramoto, Sanae
Nariai, Eri
Taira, Masakatsu
Hachisu, Yushi
Tokaji, Akihiko
Shinohara, Michiyo
Kishimoto, Tsuyoshi
Itokawa, Kentaro
Kobayashi, Yusuke
Kadokura, Keisuke
Kamiya, Hajime
Matsui, Tamano
Suzuki, Motoi
Kuroda, Makoto
author_sort Sekizuka, Tsuyoshi
collection PubMed
description Japan has reported 26 cases of coronavirus disease 2019 (COVID-19) linked to cruise tours on the River Nile in Egypt between March 5 and 15, 2020. Here, we characterized the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome of isolates from 10 travelers who returned from Egypt and from patients possibly associated with these travelers. We performed haplotype network analysis of SARS-CoV-2 isolates using genome-wide single-nucleotide variations. Our analysis identified two potential Egypt-related clusters from these imported cases, and these clusters were related to globally detected viruses in different countries.
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spelling pubmed-72917802020-06-23 SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise Sekizuka, Tsuyoshi Kuramoto, Sanae Nariai, Eri Taira, Masakatsu Hachisu, Yushi Tokaji, Akihiko Shinohara, Michiyo Kishimoto, Tsuyoshi Itokawa, Kentaro Kobayashi, Yusuke Kadokura, Keisuke Kamiya, Hajime Matsui, Tamano Suzuki, Motoi Kuroda, Makoto Front Microbiol Microbiology Japan has reported 26 cases of coronavirus disease 2019 (COVID-19) linked to cruise tours on the River Nile in Egypt between March 5 and 15, 2020. Here, we characterized the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome of isolates from 10 travelers who returned from Egypt and from patients possibly associated with these travelers. We performed haplotype network analysis of SARS-CoV-2 isolates using genome-wide single-nucleotide variations. Our analysis identified two potential Egypt-related clusters from these imported cases, and these clusters were related to globally detected viruses in different countries. Frontiers Media S.A. 2020-06-05 /pmc/articles/PMC7291780/ /pubmed/32582136 http://dx.doi.org/10.3389/fmicb.2020.01316 Text en Copyright © 2020 Sekizuka, Kuramoto, Nariai, Taira, Hachisu, Tokaji, Shinohara, Kishimoto, Itokawa, Kobayashi, Kadokura, Kamiya, Matsui, Suzuki and Kuroda. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Sekizuka, Tsuyoshi
Kuramoto, Sanae
Nariai, Eri
Taira, Masakatsu
Hachisu, Yushi
Tokaji, Akihiko
Shinohara, Michiyo
Kishimoto, Tsuyoshi
Itokawa, Kentaro
Kobayashi, Yusuke
Kadokura, Keisuke
Kamiya, Hajime
Matsui, Tamano
Suzuki, Motoi
Kuroda, Makoto
SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
title SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
title_full SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
title_fullStr SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
title_full_unstemmed SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
title_short SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
title_sort sars-cov-2 genome analysis of japanese travelers in nile river cruise
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7291780/
https://www.ncbi.nlm.nih.gov/pubmed/32582136
http://dx.doi.org/10.3389/fmicb.2020.01316
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