Cargando…
Open source code for behavior analysis in rodents
AIM: We have conducted a series of behavioral tests, which cover a broad range of behavioral domains, on various strains of genetically engineered mice. For the behavioral screening, we have been using Image J plugins that we developed for most of the tests in the battery. Our behavioral analysis sy...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7292282/ https://www.ncbi.nlm.nih.gov/pubmed/30659767 http://dx.doi.org/10.1002/npr2.12047 |
_version_ | 1783546079217713152 |
---|---|
author | Hattori, Satoko Okumura, Yoshihiro Takao, Keizo Yamaguchi, Yoko Miyakawa, Tsuyoshi |
author_facet | Hattori, Satoko Okumura, Yoshihiro Takao, Keizo Yamaguchi, Yoko Miyakawa, Tsuyoshi |
author_sort | Hattori, Satoko |
collection | PubMed |
description | AIM: We have conducted a series of behavioral tests, which cover a broad range of behavioral domains, on various strains of genetically engineered mice. For the behavioral screening, we have been using Image J plugins that we developed for most of the tests in the battery. Our behavioral analysis system with the plugins enables systematic and automated image analysis of behavior. The plugins are freely available on the “Mouse Phenotype Database” website (http://www.mouse-phenotype.org/software.html). Here, we release the source code of the plugins in a Git repository with the aim of promoting their use and expanding their functionality. METHODS: We published the source code of the Image J plugins for behavioral analysis at Git repository (https://github.com/neuroinformatics). The source code for light/dark transition, elevated plus maze, open filed, T‐maze, and fear conditioning tests was made publicly available in the repository. CONCLUSIONS: The source code of the plugins for the behavioral tests as well as the pre‐compiled binaries can be freely obtained. The open source code could promote the development and modification of the plugins for additional behavioral indices in these tests and for other behavioral tests. |
format | Online Article Text |
id | pubmed-7292282 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-72922822020-12-08 Open source code for behavior analysis in rodents Hattori, Satoko Okumura, Yoshihiro Takao, Keizo Yamaguchi, Yoko Miyakawa, Tsuyoshi Neuropsychopharmacol Rep Micro Reports AIM: We have conducted a series of behavioral tests, which cover a broad range of behavioral domains, on various strains of genetically engineered mice. For the behavioral screening, we have been using Image J plugins that we developed for most of the tests in the battery. Our behavioral analysis system with the plugins enables systematic and automated image analysis of behavior. The plugins are freely available on the “Mouse Phenotype Database” website (http://www.mouse-phenotype.org/software.html). Here, we release the source code of the plugins in a Git repository with the aim of promoting their use and expanding their functionality. METHODS: We published the source code of the Image J plugins for behavioral analysis at Git repository (https://github.com/neuroinformatics). The source code for light/dark transition, elevated plus maze, open filed, T‐maze, and fear conditioning tests was made publicly available in the repository. CONCLUSIONS: The source code of the plugins for the behavioral tests as well as the pre‐compiled binaries can be freely obtained. The open source code could promote the development and modification of the plugins for additional behavioral indices in these tests and for other behavioral tests. John Wiley and Sons Inc. 2019-01-18 /pmc/articles/PMC7292282/ /pubmed/30659767 http://dx.doi.org/10.1002/npr2.12047 Text en © 2019 The Authors. Neuropsychopharmacology Reports published by John Wiley & Sons Australia, Ltd on behalf of The Japanese Society of Neuropsychopharmacology This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Micro Reports Hattori, Satoko Okumura, Yoshihiro Takao, Keizo Yamaguchi, Yoko Miyakawa, Tsuyoshi Open source code for behavior analysis in rodents |
title | Open source code for behavior analysis in rodents |
title_full | Open source code for behavior analysis in rodents |
title_fullStr | Open source code for behavior analysis in rodents |
title_full_unstemmed | Open source code for behavior analysis in rodents |
title_short | Open source code for behavior analysis in rodents |
title_sort | open source code for behavior analysis in rodents |
topic | Micro Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7292282/ https://www.ncbi.nlm.nih.gov/pubmed/30659767 http://dx.doi.org/10.1002/npr2.12047 |
work_keys_str_mv | AT hattorisatoko opensourcecodeforbehavioranalysisinrodents AT okumurayoshihiro opensourcecodeforbehavioranalysisinrodents AT takaokeizo opensourcecodeforbehavioranalysisinrodents AT yamaguchiyoko opensourcecodeforbehavioranalysisinrodents AT miyakawatsuyoshi opensourcecodeforbehavioranalysisinrodents |