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Time Series Mining at Petascale Performance
The mining of time series data plays an important role in modern information retrieval and analysis systems. In particular, the identification of similarities within and across time series has garnered significant attention and effort over the last few years. For this task, the class of matrix profi...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7295345/ http://dx.doi.org/10.1007/978-3-030-50743-5_6 |
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author | Raoofy, Amir Karlstetter, Roman Yang, Dai Trinitis, Carsten Schulz, Martin |
author_facet | Raoofy, Amir Karlstetter, Roman Yang, Dai Trinitis, Carsten Schulz, Martin |
author_sort | Raoofy, Amir |
collection | PubMed |
description | The mining of time series data plays an important role in modern information retrieval and analysis systems. In particular, the identification of similarities within and across time series has garnered significant attention and effort over the last few years. For this task, the class of matrix profile algorithms, which create a generic structure that encodes correlations among records and dimensions—the matrix profile—is a promising approach, as it allows simplified post-processing and analysis steps by examining the resulting matrix profile structure. However, it is expensive to create a matrix profile: it requires significant computational power to evaluate the distance among all subsequence pairs in a time series, especially for very long and multi-dimensional time series with a large dimensionality. Existing approaches are limited in their scalability, as they do not target High Performance Computing systems, and—for most realistic problems—are suited only for datasets with a small dimensionality. In this paper, we introduce a novel MPI-based approach for the calculation of a matrix profile for multi-dimensional time series that pushes these limits. We evaluate the efficiency of our approach using an analytical performance model combined with experimental data. Finally, we demonstrate our solution on a 128-dimensional time series dataset of 1 million records, solving 274 trillion sorts at a sustained 1.3 Petaflop/s performance on the SuperMUC-NG system. |
format | Online Article Text |
id | pubmed-7295345 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
record_format | MEDLINE/PubMed |
spelling | pubmed-72953452020-06-16 Time Series Mining at Petascale Performance Raoofy, Amir Karlstetter, Roman Yang, Dai Trinitis, Carsten Schulz, Martin High Performance Computing Article The mining of time series data plays an important role in modern information retrieval and analysis systems. In particular, the identification of similarities within and across time series has garnered significant attention and effort over the last few years. For this task, the class of matrix profile algorithms, which create a generic structure that encodes correlations among records and dimensions—the matrix profile—is a promising approach, as it allows simplified post-processing and analysis steps by examining the resulting matrix profile structure. However, it is expensive to create a matrix profile: it requires significant computational power to evaluate the distance among all subsequence pairs in a time series, especially for very long and multi-dimensional time series with a large dimensionality. Existing approaches are limited in their scalability, as they do not target High Performance Computing systems, and—for most realistic problems—are suited only for datasets with a small dimensionality. In this paper, we introduce a novel MPI-based approach for the calculation of a matrix profile for multi-dimensional time series that pushes these limits. We evaluate the efficiency of our approach using an analytical performance model combined with experimental data. Finally, we demonstrate our solution on a 128-dimensional time series dataset of 1 million records, solving 274 trillion sorts at a sustained 1.3 Petaflop/s performance on the SuperMUC-NG system. 2020-05-22 /pmc/articles/PMC7295345/ http://dx.doi.org/10.1007/978-3-030-50743-5_6 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Raoofy, Amir Karlstetter, Roman Yang, Dai Trinitis, Carsten Schulz, Martin Time Series Mining at Petascale Performance |
title | Time Series Mining at Petascale Performance |
title_full | Time Series Mining at Petascale Performance |
title_fullStr | Time Series Mining at Petascale Performance |
title_full_unstemmed | Time Series Mining at Petascale Performance |
title_short | Time Series Mining at Petascale Performance |
title_sort | time series mining at petascale performance |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7295345/ http://dx.doi.org/10.1007/978-3-030-50743-5_6 |
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