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A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements

Many diseases of the eye are associated with alterations in the retinal vasculature that are possibly preceded by undetected changes in blood flow. In this work, a robust blood flow quantification framework is presented based on optical coherence tomography (OCT) angiography imaging and deep learnin...

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Autores principales: Braaf, Boy, Donner, Sabine, Uribe-Patarroyo, Néstor, Bouma, Brett E., Vakoc, Benjamin J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7295995/
https://www.ncbi.nlm.nih.gov/pubmed/32541887
http://dx.doi.org/10.1038/s41598-020-66158-8
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author Braaf, Boy
Donner, Sabine
Uribe-Patarroyo, Néstor
Bouma, Brett E.
Vakoc, Benjamin J.
author_facet Braaf, Boy
Donner, Sabine
Uribe-Patarroyo, Néstor
Bouma, Brett E.
Vakoc, Benjamin J.
author_sort Braaf, Boy
collection PubMed
description Many diseases of the eye are associated with alterations in the retinal vasculature that are possibly preceded by undetected changes in blood flow. In this work, a robust blood flow quantification framework is presented based on optical coherence tomography (OCT) angiography imaging and deep learning. The analysis used a forward signal model to simulate OCT blood flow data for training of a neural network (NN). The NN was combined with pre- and post-processing steps to create an analysis framework for measuring flow rates from individual blood vessels. The framework’s accuracy was validated using both blood flow phantoms and human subject imaging, and across flow speed, vessel angle, hematocrit levels, and signal-to-noise ratio. The reported flow rate of the calibrated NN framework was measured to be largely independent of vessel angle, hematocrit levels, and measurement signal-to-noise ratio. In vivo retinal flow rate measurements were self-consistent across vascular branch points, and approximately followed a predicted power-law dependence on the vessel diameter. The presented OCT-based NN flow rate estimation framework addresses the need for a robust, deployable, and label-free quantitative retinal blood flow mapping technique.
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spelling pubmed-72959952020-06-17 A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements Braaf, Boy Donner, Sabine Uribe-Patarroyo, Néstor Bouma, Brett E. Vakoc, Benjamin J. Sci Rep Article Many diseases of the eye are associated with alterations in the retinal vasculature that are possibly preceded by undetected changes in blood flow. In this work, a robust blood flow quantification framework is presented based on optical coherence tomography (OCT) angiography imaging and deep learning. The analysis used a forward signal model to simulate OCT blood flow data for training of a neural network (NN). The NN was combined with pre- and post-processing steps to create an analysis framework for measuring flow rates from individual blood vessels. The framework’s accuracy was validated using both blood flow phantoms and human subject imaging, and across flow speed, vessel angle, hematocrit levels, and signal-to-noise ratio. The reported flow rate of the calibrated NN framework was measured to be largely independent of vessel angle, hematocrit levels, and measurement signal-to-noise ratio. In vivo retinal flow rate measurements were self-consistent across vascular branch points, and approximately followed a predicted power-law dependence on the vessel diameter. The presented OCT-based NN flow rate estimation framework addresses the need for a robust, deployable, and label-free quantitative retinal blood flow mapping technique. Nature Publishing Group UK 2020-06-15 /pmc/articles/PMC7295995/ /pubmed/32541887 http://dx.doi.org/10.1038/s41598-020-66158-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Braaf, Boy
Donner, Sabine
Uribe-Patarroyo, Néstor
Bouma, Brett E.
Vakoc, Benjamin J.
A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements
title A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements
title_full A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements
title_fullStr A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements
title_full_unstemmed A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements
title_short A Neural Network Approach to Quantify Blood Flow from Retinal OCT Intensity Time-Series Measurements
title_sort neural network approach to quantify blood flow from retinal oct intensity time-series measurements
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7295995/
https://www.ncbi.nlm.nih.gov/pubmed/32541887
http://dx.doi.org/10.1038/s41598-020-66158-8
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