Cargando…
Simulations of the 2D self-assembly of tripod-shaped building blocks
We introduce a molecular dynamics (MD) coarse-grained model for the description of tripod building blocks. This model has been used by us already for linear, V-shape, and tetratopic molecules. We wanted to further extend its possibilities to trifunctional molecules to prove its versatility. For the...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Beilstein-Institut
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7296195/ https://www.ncbi.nlm.nih.gov/pubmed/32566438 http://dx.doi.org/10.3762/bjnano.11.73 |
_version_ | 1783546800776413184 |
---|---|
author | Baran, Łukasz Rżysko, Wojciech Słyk, Edyta |
author_facet | Baran, Łukasz Rżysko, Wojciech Słyk, Edyta |
author_sort | Baran, Łukasz |
collection | PubMed |
description | We introduce a molecular dynamics (MD) coarse-grained model for the description of tripod building blocks. This model has been used by us already for linear, V-shape, and tetratopic molecules. We wanted to further extend its possibilities to trifunctional molecules to prove its versatility. For the chosen systems we have also compared the MD results with Monte Carlo results on a triangular lattice. We have shown that the constraints present in the latter method can enforce the formation of completely different structures, not reproducible with off-lattice simulations. In addition to that, we have characterized the obtained structures regarding various parameters such as theoretical diffraction pattern and average association number. |
format | Online Article Text |
id | pubmed-7296195 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Beilstein-Institut |
record_format | MEDLINE/PubMed |
spelling | pubmed-72961952020-06-19 Simulations of the 2D self-assembly of tripod-shaped building blocks Baran, Łukasz Rżysko, Wojciech Słyk, Edyta Beilstein J Nanotechnol Full Research Paper We introduce a molecular dynamics (MD) coarse-grained model for the description of tripod building blocks. This model has been used by us already for linear, V-shape, and tetratopic molecules. We wanted to further extend its possibilities to trifunctional molecules to prove its versatility. For the chosen systems we have also compared the MD results with Monte Carlo results on a triangular lattice. We have shown that the constraints present in the latter method can enforce the formation of completely different structures, not reproducible with off-lattice simulations. In addition to that, we have characterized the obtained structures regarding various parameters such as theoretical diffraction pattern and average association number. Beilstein-Institut 2020-06-08 /pmc/articles/PMC7296195/ /pubmed/32566438 http://dx.doi.org/10.3762/bjnano.11.73 Text en Copyright © 2020, Baran et al. https://creativecommons.org/licenses/by/4.0https://www.beilstein-journals.org/bjnano/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0). Please note that the reuse, redistribution and reproduction in particular requires that the authors and source are credited. The license is subject to the Beilstein Journal of Nanotechnology terms and conditions: (https://www.beilstein-journals.org/bjnano/terms) |
spellingShingle | Full Research Paper Baran, Łukasz Rżysko, Wojciech Słyk, Edyta Simulations of the 2D self-assembly of tripod-shaped building blocks |
title | Simulations of the 2D self-assembly of tripod-shaped building blocks |
title_full | Simulations of the 2D self-assembly of tripod-shaped building blocks |
title_fullStr | Simulations of the 2D self-assembly of tripod-shaped building blocks |
title_full_unstemmed | Simulations of the 2D self-assembly of tripod-shaped building blocks |
title_short | Simulations of the 2D self-assembly of tripod-shaped building blocks |
title_sort | simulations of the 2d self-assembly of tripod-shaped building blocks |
topic | Full Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7296195/ https://www.ncbi.nlm.nih.gov/pubmed/32566438 http://dx.doi.org/10.3762/bjnano.11.73 |
work_keys_str_mv | AT baranłukasz simulationsofthe2dselfassemblyoftripodshapedbuildingblocks AT rzyskowojciech simulationsofthe2dselfassemblyoftripodshapedbuildingblocks AT słykedyta simulationsofthe2dselfassemblyoftripodshapedbuildingblocks |