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SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19

OBJECTIVE: Establishing a social contact data sharing initiative and an interactive tool to assess mitigation strategies for COVID-19. RESULTS: We organized data sharing of published social contact surveys via online repositories and formatting guidelines. We analyzed this social contact data in ter...

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Autores principales: Willem, Lander, Van Hoang, Thang, Funk, Sebastian, Coletti, Pietro, Beutels, Philippe, Hens, Niel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7296890/
https://www.ncbi.nlm.nih.gov/pubmed/32546245
http://dx.doi.org/10.1186/s13104-020-05136-9
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author Willem, Lander
Van Hoang, Thang
Funk, Sebastian
Coletti, Pietro
Beutels, Philippe
Hens, Niel
author_facet Willem, Lander
Van Hoang, Thang
Funk, Sebastian
Coletti, Pietro
Beutels, Philippe
Hens, Niel
author_sort Willem, Lander
collection PubMed
description OBJECTIVE: Establishing a social contact data sharing initiative and an interactive tool to assess mitigation strategies for COVID-19. RESULTS: We organized data sharing of published social contact surveys via online repositories and formatting guidelines. We analyzed this social contact data in terms of weighted social contact matrices, next generation matrices, relative incidence and R[Formula: see text] . We incorporated location-specific physical distancing measures (e.g. school closure or at work) and capture their effect on transmission dynamics. All methods have been implemented in an online application based on R Shiny and applied to COVID-19 with age-specific susceptibility and infectiousness. Using our online tool with the available social contact data, we illustrate that physical distancing could have a considerable impact on reducing transmission for COVID-19. The effect itself depends on assumptions made about disease-specific characteristics and the choice of intervention(s).
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spelling pubmed-72968902020-06-16 SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 Willem, Lander Van Hoang, Thang Funk, Sebastian Coletti, Pietro Beutels, Philippe Hens, Niel BMC Res Notes Research Note OBJECTIVE: Establishing a social contact data sharing initiative and an interactive tool to assess mitigation strategies for COVID-19. RESULTS: We organized data sharing of published social contact surveys via online repositories and formatting guidelines. We analyzed this social contact data in terms of weighted social contact matrices, next generation matrices, relative incidence and R[Formula: see text] . We incorporated location-specific physical distancing measures (e.g. school closure or at work) and capture their effect on transmission dynamics. All methods have been implemented in an online application based on R Shiny and applied to COVID-19 with age-specific susceptibility and infectiousness. Using our online tool with the available social contact data, we illustrate that physical distancing could have a considerable impact on reducing transmission for COVID-19. The effect itself depends on assumptions made about disease-specific characteristics and the choice of intervention(s). BioMed Central 2020-06-16 /pmc/articles/PMC7296890/ /pubmed/32546245 http://dx.doi.org/10.1186/s13104-020-05136-9 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Willem, Lander
Van Hoang, Thang
Funk, Sebastian
Coletti, Pietro
Beutels, Philippe
Hens, Niel
SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19
title SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19
title_full SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19
title_fullStr SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19
title_full_unstemmed SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19
title_short SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19
title_sort socrates: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for covid-19
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7296890/
https://www.ncbi.nlm.nih.gov/pubmed/32546245
http://dx.doi.org/10.1186/s13104-020-05136-9
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