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SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19
OBJECTIVE: Establishing a social contact data sharing initiative and an interactive tool to assess mitigation strategies for COVID-19. RESULTS: We organized data sharing of published social contact surveys via online repositories and formatting guidelines. We analyzed this social contact data in ter...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7296890/ https://www.ncbi.nlm.nih.gov/pubmed/32546245 http://dx.doi.org/10.1186/s13104-020-05136-9 |
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author | Willem, Lander Van Hoang, Thang Funk, Sebastian Coletti, Pietro Beutels, Philippe Hens, Niel |
author_facet | Willem, Lander Van Hoang, Thang Funk, Sebastian Coletti, Pietro Beutels, Philippe Hens, Niel |
author_sort | Willem, Lander |
collection | PubMed |
description | OBJECTIVE: Establishing a social contact data sharing initiative and an interactive tool to assess mitigation strategies for COVID-19. RESULTS: We organized data sharing of published social contact surveys via online repositories and formatting guidelines. We analyzed this social contact data in terms of weighted social contact matrices, next generation matrices, relative incidence and R[Formula: see text] . We incorporated location-specific physical distancing measures (e.g. school closure or at work) and capture their effect on transmission dynamics. All methods have been implemented in an online application based on R Shiny and applied to COVID-19 with age-specific susceptibility and infectiousness. Using our online tool with the available social contact data, we illustrate that physical distancing could have a considerable impact on reducing transmission for COVID-19. The effect itself depends on assumptions made about disease-specific characteristics and the choice of intervention(s). |
format | Online Article Text |
id | pubmed-7296890 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-72968902020-06-16 SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 Willem, Lander Van Hoang, Thang Funk, Sebastian Coletti, Pietro Beutels, Philippe Hens, Niel BMC Res Notes Research Note OBJECTIVE: Establishing a social contact data sharing initiative and an interactive tool to assess mitigation strategies for COVID-19. RESULTS: We organized data sharing of published social contact surveys via online repositories and formatting guidelines. We analyzed this social contact data in terms of weighted social contact matrices, next generation matrices, relative incidence and R[Formula: see text] . We incorporated location-specific physical distancing measures (e.g. school closure or at work) and capture their effect on transmission dynamics. All methods have been implemented in an online application based on R Shiny and applied to COVID-19 with age-specific susceptibility and infectiousness. Using our online tool with the available social contact data, we illustrate that physical distancing could have a considerable impact on reducing transmission for COVID-19. The effect itself depends on assumptions made about disease-specific characteristics and the choice of intervention(s). BioMed Central 2020-06-16 /pmc/articles/PMC7296890/ /pubmed/32546245 http://dx.doi.org/10.1186/s13104-020-05136-9 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Note Willem, Lander Van Hoang, Thang Funk, Sebastian Coletti, Pietro Beutels, Philippe Hens, Niel SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 |
title | SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 |
title_full | SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 |
title_fullStr | SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 |
title_full_unstemmed | SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 |
title_short | SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19 |
title_sort | socrates: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for covid-19 |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7296890/ https://www.ncbi.nlm.nih.gov/pubmed/32546245 http://dx.doi.org/10.1186/s13104-020-05136-9 |
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