Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties

The genomics and genetic data of pigmented and non-pigmented Malaysian rice varieties are still limited. Hence, we performed the genome resequencing of two black rice varieties (Bali, Pulut Hitam 9), two red rice varieties (MRM16, MRQ100) and two white rice varieties (MR297 and MRQ76) using Illumina...

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Autores principales: Zainal-Abidin, Rabiatul-Adawiah, Zainal, Zamri, Mohamed-Hussein, Zeti-Azura, Sew, Yun Shin, Simoh, Sanimah, Ab Razak, Shahril, Abu-Bakar, Norliza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Agricultural and Biological Science
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7298397/
https://www.ncbi.nlm.nih.gov/pubmed/32566707
http://dx.doi.org/10.1016/j.dib.2020.105806
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author Zainal-Abidin, Rabiatul-Adawiah
Zainal, Zamri
Mohamed-Hussein, Zeti-Azura
Sew, Yun Shin
Simoh, Sanimah
Ab Razak, Shahril
Abu-Bakar, Norliza
author_facet Zainal-Abidin, Rabiatul-Adawiah
Zainal, Zamri
Mohamed-Hussein, Zeti-Azura
Sew, Yun Shin
Simoh, Sanimah
Ab Razak, Shahril
Abu-Bakar, Norliza
author_sort Zainal-Abidin, Rabiatul-Adawiah
collection PubMed
description The genomics and genetic data of pigmented and non-pigmented Malaysian rice varieties are still limited. Hence, we performed the genome resequencing of two black rice varieties (Bali, Pulut Hitam 9), two red rice varieties (MRM16, MRQ100) and two white rice varieties (MR297 and MRQ76) using Illumina HiSeq 4000 platform with 30x sequencing coverage. We aimed to identify and annotate single nucleotide polymorphisms (SNPs) from the genome of these four pigmented and two non-pigmented rice varieties. The potential SNPs will be used in developing the functional SNP markers related to nutritional (i.e. antioxidant, folate, amylose) and quality (i.e. aromatic) traits. Raw data of the pigmented and non-pigmented rice varieties have been deposited into the European Nucleotide Archive (ENA) database with accession number PRJEB29070 and PRJEB32344, respectively.
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spelling pubmed-72983972020-06-19 Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties Zainal-Abidin, Rabiatul-Adawiah Zainal, Zamri Mohamed-Hussein, Zeti-Azura Sew, Yun Shin Simoh, Sanimah Ab Razak, Shahril Abu-Bakar, Norliza Data Brief Agricultural and Biological Science The genomics and genetic data of pigmented and non-pigmented Malaysian rice varieties are still limited. Hence, we performed the genome resequencing of two black rice varieties (Bali, Pulut Hitam 9), two red rice varieties (MRM16, MRQ100) and two white rice varieties (MR297 and MRQ76) using Illumina HiSeq 4000 platform with 30x sequencing coverage. We aimed to identify and annotate single nucleotide polymorphisms (SNPs) from the genome of these four pigmented and two non-pigmented rice varieties. The potential SNPs will be used in developing the functional SNP markers related to nutritional (i.e. antioxidant, folate, amylose) and quality (i.e. aromatic) traits. Raw data of the pigmented and non-pigmented rice varieties have been deposited into the European Nucleotide Archive (ENA) database with accession number PRJEB29070 and PRJEB32344, respectively. Elsevier 2020-06-03 /pmc/articles/PMC7298397/ /pubmed/32566707 http://dx.doi.org/10.1016/j.dib.2020.105806 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Zainal-Abidin, Rabiatul-Adawiah
Zainal, Zamri
Mohamed-Hussein, Zeti-Azura
Sew, Yun Shin
Simoh, Sanimah
Ab Razak, Shahril
Abu-Bakar, Norliza
Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties
title Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties
title_full Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties
title_fullStr Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties
title_full_unstemmed Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties
title_short Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties
title_sort data on genome resequencing of pigmented and non-pigmented malaysian rice varieties
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7298397/
https://www.ncbi.nlm.nih.gov/pubmed/32566707
http://dx.doi.org/10.1016/j.dib.2020.105806
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