Cargando…
Predicting the Effect of Chemical Factors on the pH of Crystallization Trials
In macromolecular crystallization, success is often dependent on the pH of the experiment. However, little is known about the pH of reagents used, and it is generally assumed that the pH of the experiment will closely match that of any buffering chemical in the solution. We use a large dataset of ex...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7298652/ https://www.ncbi.nlm.nih.gov/pubmed/32540772 http://dx.doi.org/10.1016/j.isci.2020.101219 |
_version_ | 1783547244947963904 |
---|---|
author | Wilson, Julie Ristic, Marko Kirkwood, Jobie Hargreaves, David Newman, Janet |
author_facet | Wilson, Julie Ristic, Marko Kirkwood, Jobie Hargreaves, David Newman, Janet |
author_sort | Wilson, Julie |
collection | PubMed |
description | In macromolecular crystallization, success is often dependent on the pH of the experiment. However, little is known about the pH of reagents used, and it is generally assumed that the pH of the experiment will closely match that of any buffering chemical in the solution. We use a large dataset of experimentally measured solution pH values to show that this assumption can be very wrong and generate a model that can be used to successfully predict the overall solution pH of a crystallization experiment. Furthermore, we investigate the time dependence of the pH of some polyethylene glycol polymers widely used in protein crystallization under different storage conditions. |
format | Online Article Text |
id | pubmed-7298652 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-72986522020-06-19 Predicting the Effect of Chemical Factors on the pH of Crystallization Trials Wilson, Julie Ristic, Marko Kirkwood, Jobie Hargreaves, David Newman, Janet iScience Article In macromolecular crystallization, success is often dependent on the pH of the experiment. However, little is known about the pH of reagents used, and it is generally assumed that the pH of the experiment will closely match that of any buffering chemical in the solution. We use a large dataset of experimentally measured solution pH values to show that this assumption can be very wrong and generate a model that can be used to successfully predict the overall solution pH of a crystallization experiment. Furthermore, we investigate the time dependence of the pH of some polyethylene glycol polymers widely used in protein crystallization under different storage conditions. Elsevier 2020-05-30 /pmc/articles/PMC7298652/ /pubmed/32540772 http://dx.doi.org/10.1016/j.isci.2020.101219 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wilson, Julie Ristic, Marko Kirkwood, Jobie Hargreaves, David Newman, Janet Predicting the Effect of Chemical Factors on the pH of Crystallization Trials |
title | Predicting the Effect of Chemical Factors on the pH of Crystallization Trials |
title_full | Predicting the Effect of Chemical Factors on the pH of Crystallization Trials |
title_fullStr | Predicting the Effect of Chemical Factors on the pH of Crystallization Trials |
title_full_unstemmed | Predicting the Effect of Chemical Factors on the pH of Crystallization Trials |
title_short | Predicting the Effect of Chemical Factors on the pH of Crystallization Trials |
title_sort | predicting the effect of chemical factors on the ph of crystallization trials |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7298652/ https://www.ncbi.nlm.nih.gov/pubmed/32540772 http://dx.doi.org/10.1016/j.isci.2020.101219 |
work_keys_str_mv | AT wilsonjulie predictingtheeffectofchemicalfactorsonthephofcrystallizationtrials AT risticmarko predictingtheeffectofchemicalfactorsonthephofcrystallizationtrials AT kirkwoodjobie predictingtheeffectofchemicalfactorsonthephofcrystallizationtrials AT hargreavesdavid predictingtheeffectofchemicalfactorsonthephofcrystallizationtrials AT newmanjanet predictingtheeffectofchemicalfactorsonthephofcrystallizationtrials |