Cargando…

Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish

BACKGROUND: Whole-genome sequencing data from wild-caught individuals of closely related North American killifish species (Fundulus xenicus, Fundulus catenatus, Fundulus nottii, and Fundulus olivaceus) were obtained using long-read Oxford Nanopore Technology (ONT) PromethION and short-read Illumina...

Descripción completa

Detalles Bibliográficos
Autores principales:	Johnson, Lisa K, Sahasrabudhe, Ruta, Gill, James Anthony, Roach, Jennifer L, Froenicke, Lutz, Brown, C Titus, Whitehead, Andrew
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Data Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7301629/ https://www.ncbi.nlm.nih.gov/pubmed/32556169 http://dx.doi.org/10.1093/gigascience/giaa067

Ejemplares similares

Endocrinological Studies on the Euryhaline Killifish, Fundulus Heteroclitus (Linn.)
por: Pickford, Grace E.
Publicado: (1959)

Developing a High-Quality Linkage Map for the Atlantic Killifish Fundulus heteroclitus
por: Miller, Jeffrey T., et al.
Publicado: (2019)

Analysis of Wheat Virome in Korea Using Illumina and Oxford Nanopore Sequencing Platforms
por: Lee, Hyo-Jeong, et al.
Publicado: (2023)

Evolutionary Toxicogenomics of the Striped Killifish (Fundulus majalis) in the New Bedford Harbor (Massachusetts, USA)
por: Ruggeri, Paolo, et al.
Publicado: (2019)

Previous oil exposure alters Gulf Killifish Fundulus grandis oil avoidance behavior
por: Martin, Charles W., et al.
Publicado: (2020)

When evolution is the solution to pollution: Key principles, and lessons from rapid repeated adaptation of killifish (Fundulus heteroclitus) populations
por: Whitehead, Andrew, et al.
Publicado: (2017)

Gross Chromosomal Rearrangements in Kluyveromyces marxianus Revealed by Illumina and Oxford Nanopore Sequencing
por: Ding, Lin, et al.
Publicado: (2020)

Genome Sequencing of Fiber Flax Cultivar Atlant Using Oxford Nanopore and Illumina Platforms
por: Dmitriev, Alexey A., et al.
Publicado: (2021)

Comparison of De Novo Transcriptome Assemblers and k-mer Strategies Using the Killifish, Fundulus heteroclitus
por: Rana, Satshil B., et al.
Publicado: (2016)

Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing
por: Wick, Ryan R., et al.
Publicado: (2023)

Targeted approach to identify genetic loci associated with evolved dioxin tolerance in Atlantic Killifish (Fundulus heteroclitus)
por: Proestou, Dina A, et al.
Publicado: (2014)

Brain-encysting trematodes (Euhaplorchis californiensis) decrease raphe serotonergic activity in California killifish (Fundulus parvipinnis)
por: Helland-Riise, Siri H., et al.
Publicado: (2020)

Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly
por: Tan, Mun Hua, et al.
Publicado: (2018)

First Draft Genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore Technology and Illumina Sequencing
por: d’Avila-Levy, Claudia M., et al.
Publicado: (2020)

Structural diversity of occluding junctions in the low-resistance chloride-secreting opercular epithelium of seawater-adapted killifish (Fundulus heteroclitus)
Publicado: (1980)

Can Diversifying Selection Be Distinguished from History in Geographic Clines? A Population Genomic Study of Killifish (Fundulus heteroclitus)
por: Strand, Allan E., et al.
Publicado: (2012)

Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology
por: Lemay, Marc-André, et al.
Publicado: (2022)

Gene-centric coverage of the human liver transcriptome: QPCR, Illumina, and Oxford Nanopore RNA-Seq
por: Ilgisonis, Ekaterina V., et al.
Publicado: (2022)

Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil
por: Stevens, Bo Maxwell, et al.
Publicado: (2023)

Comparative Chronic Liver Toxicity of Benzo[a]pyrene in Two Populations of the Atlantic Killifish (Fundulus heteroclitus) with Different Exposure Histories
por: Wills, Lauren P., et al.
Publicado: (2010)

Genetic variation at aryl hydrocarbon receptor (AHR) loci in populations of Atlantic killifish (Fundulus heteroclitus) inhabiting polluted and reference habitats
por: Reitzel, Adam M, et al.
Publicado: (2014)

Draft Genome Sequences of Six Strains Isolated from the InSight Spacecraft and Associated Surfaces Using Oxford Nanopore- and Illumina-Based Sequencing
por: Vera, Daniel L., et al.
Publicado: (2020)

Location of Balanced Chromosome-Translocation Breakpoints by Long-Read Sequencing on the Oxford Nanopore Platform
por: Hu, Liang, et al.
Publicado: (2020)

Steep, coincident, and concordant clines in mitochondrial and nuclear‐encoded genes in a hybrid zone between subspecies of Atlantic killifish, Fundulus heteroclitus
por: McKenzie, Jessica L., et al.
Publicado: (2016)

Exploring taxonomic and functional microbiome of Hawaiian stream and spring irrigation water systems using Illumina and Oxford Nanopore sequencing platforms
por: Klair, Diksha, et al.
Publicado: (2023)

Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing
por: Chen, Zhao, et al.
Publicado: (2020)

Complete Genome Sequence of Caulobacter sp. Strain S6, Obtained Using Oxford Nanopore and Illumina Sequencing
por: Zhang, Cuiyang, et al.
Publicado: (2021)

Comparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis
por: Linde, Jörg, et al.
Publicado: (2023)

Teleost chloride cell. II. Autoradiographic localization of gill Na,K- ATPase in killifish Fundulus heteroclitus adapted to low and high salinity environments
Publicado: (1976)

Closed Genome Sequences of Clinical Neisseria gonorrhoeae Strains Obtained from Combined Oxford Nanopore and Illumina Sequencing
por: White, Richard C., et al.
Publicado: (2019)

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
por: Sevim, Volkan, et al.
Publicado: (2019)

Transcriptomic assessment of resistance to effects of an aryl hydrocarbon receptor (AHR) agonist in embryos of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site
por: Oleksiak, Marjorie F, et al.
Publicado: (2011)

De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing
por: Dhar, Ruby, et al.
Publicado: (2019)

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
por: Wick, Ryan R., et al.
Publicado: (2018)

Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads
por: Konanov, Dmitry N, et al.
Publicado: (2023)

Complete Genome Sequence of Clostridioides difficile Ribotype 255 Strain Mta-79, Assembled Using Oxford Nanopore and Illumina Sequencing
por: Spinler, Jennifer K., et al.
Publicado: (2019)

Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among Enterobacteriaceae
por: Conzemius, Rick, et al.
Publicado: (2022)

Prediction of transcript isoforms in 19 chicken tissues by Oxford Nanopore long-read sequencing
por: Guan, Dailu, et al.
Publicado: (2022)

Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing
por: Fuchs, Steffen, et al.
Publicado: (2022)

GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads
por: Dishuck, Philip C, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_v3blp5kso2ncjccmasoop0mui8