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A Novel Metric to Evaluate In Situ Workflows
Performance evaluation is crucial to understanding the behavior of scientific workflows and efficiently utilizing resources on high-performance computing architectures. In this study, we target an emerging type of workflow, called in situ workflows. Through an analysis of the state-of-the-art resear...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7302250/ http://dx.doi.org/10.1007/978-3-030-50371-0_40 |
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author | Do, Tu Mai Anh Pottier, Loïc Thomas, Stephen da Silva, Rafael Ferreira Cuendet, Michel A. Weinstein, Harel Estrada, Trilce Taufer, Michela Deelman, Ewa |
author_facet | Do, Tu Mai Anh Pottier, Loïc Thomas, Stephen da Silva, Rafael Ferreira Cuendet, Michel A. Weinstein, Harel Estrada, Trilce Taufer, Michela Deelman, Ewa |
author_sort | Do, Tu Mai Anh |
collection | PubMed |
description | Performance evaluation is crucial to understanding the behavior of scientific workflows and efficiently utilizing resources on high-performance computing architectures. In this study, we target an emerging type of workflow, called in situ workflows. Through an analysis of the state-of-the-art research on in situ workflows, we model a theoretical framework that helps characterize such workflows. We further propose a lightweight metric for assessing resource usage efficiency of an in situ workflow execution. By applying this metric to a simple, yet representative, synthetic workflow, we explore two possible scenarios (Idle Simulation and Idle Analyzer) for the execution of real in situ workflows. Experimental results show that there is no substantial difference in the performance of both the in transit placement (analytics on dedicated nodes) and the helper-core configuration (analytics co-allocated with simulation) on our target system. |
format | Online Article Text |
id | pubmed-7302250 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
record_format | MEDLINE/PubMed |
spelling | pubmed-73022502020-06-18 A Novel Metric to Evaluate In Situ Workflows Do, Tu Mai Anh Pottier, Loïc Thomas, Stephen da Silva, Rafael Ferreira Cuendet, Michel A. Weinstein, Harel Estrada, Trilce Taufer, Michela Deelman, Ewa Computational Science – ICCS 2020 Article Performance evaluation is crucial to understanding the behavior of scientific workflows and efficiently utilizing resources on high-performance computing architectures. In this study, we target an emerging type of workflow, called in situ workflows. Through an analysis of the state-of-the-art research on in situ workflows, we model a theoretical framework that helps characterize such workflows. We further propose a lightweight metric for assessing resource usage efficiency of an in situ workflow execution. By applying this metric to a simple, yet representative, synthetic workflow, we explore two possible scenarios (Idle Simulation and Idle Analyzer) for the execution of real in situ workflows. Experimental results show that there is no substantial difference in the performance of both the in transit placement (analytics on dedicated nodes) and the helper-core configuration (analytics co-allocated with simulation) on our target system. 2020-05-26 /pmc/articles/PMC7302250/ http://dx.doi.org/10.1007/978-3-030-50371-0_40 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Do, Tu Mai Anh Pottier, Loïc Thomas, Stephen da Silva, Rafael Ferreira Cuendet, Michel A. Weinstein, Harel Estrada, Trilce Taufer, Michela Deelman, Ewa A Novel Metric to Evaluate In Situ Workflows |
title | A Novel Metric to Evaluate In Situ Workflows |
title_full | A Novel Metric to Evaluate In Situ Workflows |
title_fullStr | A Novel Metric to Evaluate In Situ Workflows |
title_full_unstemmed | A Novel Metric to Evaluate In Situ Workflows |
title_short | A Novel Metric to Evaluate In Situ Workflows |
title_sort | novel metric to evaluate in situ workflows |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7302250/ http://dx.doi.org/10.1007/978-3-030-50371-0_40 |
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