Cargando…
Patient-Specific Cardiac Parametrization from Eikonal Simulations
Simulations in cardiac electrophysiology use the bidomain equations to describe the electrical potential in the heart. If only the electrical activation sequence in the heart is needed, then the full bidomain equations can be substituted by the Eikonal equation which allows much faster responses w.r...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7302314/ http://dx.doi.org/10.1007/978-3-030-50371-0_21 |
_version_ | 1783547821299859456 |
---|---|
author | Ganellari, Daniel Haase, Gundolf Zumbusch, Gerhard Lotz, Johannes Peltzer, Patrick Leppkes, Klaus Naumann, Uwe |
author_facet | Ganellari, Daniel Haase, Gundolf Zumbusch, Gerhard Lotz, Johannes Peltzer, Patrick Leppkes, Klaus Naumann, Uwe |
author_sort | Ganellari, Daniel |
collection | PubMed |
description | Simulations in cardiac electrophysiology use the bidomain equations to describe the electrical potential in the heart. If only the electrical activation sequence in the heart is needed, then the full bidomain equations can be substituted by the Eikonal equation which allows much faster responses w.r.t. the changed material parameters in the equation. We use our Eikonal solver optimized for memory usage and parallelization. Patient-specific simulations in cardiac electrophysiology require patient-specific conductivity parameters which are not accurately available in vivo. One chance to improve the given conductivity parameters consists in comparing the computed activation sequence on the heart surface with the measured ECG on the torso mapped onto this surface. By minimizing the squared distance between the measured solution and the Eikonal computed solution we are able to determine the material parameters more accurately. To reduce the number of optimization parameters in this process, we group the material parameters and introduce a specific scaling parameter [Formula: see text] for each group. The minimization takes place w.r.t. the scaling [Formula: see text]. We solve the minimization problem by the BFGS method and adaptive step size control. The required gradient [Formula: see text] is computed either via finite differences or algorithmic differentiation using [Image: see text] in tangent as well as in adjoint mode. We present convergence behavior as well as runtime and scaling results. |
format | Online Article Text |
id | pubmed-7302314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
record_format | MEDLINE/PubMed |
spelling | pubmed-73023142020-06-18 Patient-Specific Cardiac Parametrization from Eikonal Simulations Ganellari, Daniel Haase, Gundolf Zumbusch, Gerhard Lotz, Johannes Peltzer, Patrick Leppkes, Klaus Naumann, Uwe Computational Science – ICCS 2020 Article Simulations in cardiac electrophysiology use the bidomain equations to describe the electrical potential in the heart. If only the electrical activation sequence in the heart is needed, then the full bidomain equations can be substituted by the Eikonal equation which allows much faster responses w.r.t. the changed material parameters in the equation. We use our Eikonal solver optimized for memory usage and parallelization. Patient-specific simulations in cardiac electrophysiology require patient-specific conductivity parameters which are not accurately available in vivo. One chance to improve the given conductivity parameters consists in comparing the computed activation sequence on the heart surface with the measured ECG on the torso mapped onto this surface. By minimizing the squared distance between the measured solution and the Eikonal computed solution we are able to determine the material parameters more accurately. To reduce the number of optimization parameters in this process, we group the material parameters and introduce a specific scaling parameter [Formula: see text] for each group. The minimization takes place w.r.t. the scaling [Formula: see text]. We solve the minimization problem by the BFGS method and adaptive step size control. The required gradient [Formula: see text] is computed either via finite differences or algorithmic differentiation using [Image: see text] in tangent as well as in adjoint mode. We present convergence behavior as well as runtime and scaling results. 2020-05-26 /pmc/articles/PMC7302314/ http://dx.doi.org/10.1007/978-3-030-50371-0_21 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Ganellari, Daniel Haase, Gundolf Zumbusch, Gerhard Lotz, Johannes Peltzer, Patrick Leppkes, Klaus Naumann, Uwe Patient-Specific Cardiac Parametrization from Eikonal Simulations |
title | Patient-Specific Cardiac Parametrization from Eikonal Simulations |
title_full | Patient-Specific Cardiac Parametrization from Eikonal Simulations |
title_fullStr | Patient-Specific Cardiac Parametrization from Eikonal Simulations |
title_full_unstemmed | Patient-Specific Cardiac Parametrization from Eikonal Simulations |
title_short | Patient-Specific Cardiac Parametrization from Eikonal Simulations |
title_sort | patient-specific cardiac parametrization from eikonal simulations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7302314/ http://dx.doi.org/10.1007/978-3-030-50371-0_21 |
work_keys_str_mv | AT ganellaridaniel patientspecificcardiacparametrizationfromeikonalsimulations AT haasegundolf patientspecificcardiacparametrizationfromeikonalsimulations AT zumbuschgerhard patientspecificcardiacparametrizationfromeikonalsimulations AT lotzjohannes patientspecificcardiacparametrizationfromeikonalsimulations AT peltzerpatrick patientspecificcardiacparametrizationfromeikonalsimulations AT leppkesklaus patientspecificcardiacparametrizationfromeikonalsimulations AT naumannuwe patientspecificcardiacparametrizationfromeikonalsimulations |