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Spatio-temporal deep learning methods for motion estimation using 4D OCT image data
PURPOSE: Localizing structures and estimating the motion of a specific target region are common problems for navigation during surgical interventions. Optical coherence tomography (OCT) is an imaging modality with a high spatial and temporal resolution that has been used for intraoperative imaging a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7303100/ https://www.ncbi.nlm.nih.gov/pubmed/32445128 http://dx.doi.org/10.1007/s11548-020-02178-z |
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author | Bengs, Marcel Gessert, Nils Schlüter, Matthias Schlaefer, Alexander |
author_facet | Bengs, Marcel Gessert, Nils Schlüter, Matthias Schlaefer, Alexander |
author_sort | Bengs, Marcel |
collection | PubMed |
description | PURPOSE: Localizing structures and estimating the motion of a specific target region are common problems for navigation during surgical interventions. Optical coherence tomography (OCT) is an imaging modality with a high spatial and temporal resolution that has been used for intraoperative imaging and also for motion estimation, for example, in the context of ophthalmic surgery or cochleostomy. Recently, motion estimation between a template and a moving OCT image has been studied with deep learning methods to overcome the shortcomings of conventional, feature-based methods. METHODS: We investigate whether using a temporal stream of OCT image volumes can improve deep learning-based motion estimation performance. For this purpose, we design and evaluate several 3D and 4D deep learning methods and we propose a new deep learning approach. Also, we propose a temporal regularization strategy at the model output. RESULTS: Using a tissue dataset without additional markers, our deep learning methods using 4D data outperform previous approaches. The best performing 4D architecture achieves an correlation coefficient (aCC) of 98.58% compared to 85.0% of a previous 3D deep learning method. Also, our temporal regularization strategy at the output further improves 4D model performance to an aCC of 99.06%. In particular, our 4D method works well for larger motion and is robust toward image rotations and motion distortions. CONCLUSIONS: We propose 4D spatio-temporal deep learning for OCT-based motion estimation. On a tissue dataset, we find that using 4D information for the model input improves performance while maintaining reasonable inference times. Our regularization strategy demonstrates that additional temporal information is also beneficial at the model output. |
format | Online Article Text |
id | pubmed-7303100 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-73031002020-06-22 Spatio-temporal deep learning methods for motion estimation using 4D OCT image data Bengs, Marcel Gessert, Nils Schlüter, Matthias Schlaefer, Alexander Int J Comput Assist Radiol Surg Original Article PURPOSE: Localizing structures and estimating the motion of a specific target region are common problems for navigation during surgical interventions. Optical coherence tomography (OCT) is an imaging modality with a high spatial and temporal resolution that has been used for intraoperative imaging and also for motion estimation, for example, in the context of ophthalmic surgery or cochleostomy. Recently, motion estimation between a template and a moving OCT image has been studied with deep learning methods to overcome the shortcomings of conventional, feature-based methods. METHODS: We investigate whether using a temporal stream of OCT image volumes can improve deep learning-based motion estimation performance. For this purpose, we design and evaluate several 3D and 4D deep learning methods and we propose a new deep learning approach. Also, we propose a temporal regularization strategy at the model output. RESULTS: Using a tissue dataset without additional markers, our deep learning methods using 4D data outperform previous approaches. The best performing 4D architecture achieves an correlation coefficient (aCC) of 98.58% compared to 85.0% of a previous 3D deep learning method. Also, our temporal regularization strategy at the output further improves 4D model performance to an aCC of 99.06%. In particular, our 4D method works well for larger motion and is robust toward image rotations and motion distortions. CONCLUSIONS: We propose 4D spatio-temporal deep learning for OCT-based motion estimation. On a tissue dataset, we find that using 4D information for the model input improves performance while maintaining reasonable inference times. Our regularization strategy demonstrates that additional temporal information is also beneficial at the model output. Springer International Publishing 2020-05-22 2020 /pmc/articles/PMC7303100/ /pubmed/32445128 http://dx.doi.org/10.1007/s11548-020-02178-z Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Original Article Bengs, Marcel Gessert, Nils Schlüter, Matthias Schlaefer, Alexander Spatio-temporal deep learning methods for motion estimation using 4D OCT image data |
title | Spatio-temporal deep learning methods for motion estimation using 4D OCT image data |
title_full | Spatio-temporal deep learning methods for motion estimation using 4D OCT image data |
title_fullStr | Spatio-temporal deep learning methods for motion estimation using 4D OCT image data |
title_full_unstemmed | Spatio-temporal deep learning methods for motion estimation using 4D OCT image data |
title_short | Spatio-temporal deep learning methods for motion estimation using 4D OCT image data |
title_sort | spatio-temporal deep learning methods for motion estimation using 4d oct image data |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7303100/ https://www.ncbi.nlm.nih.gov/pubmed/32445128 http://dx.doi.org/10.1007/s11548-020-02178-z |
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