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An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification

In this work, we develop an adaptive, near-optimal, 3-Dimensional (3D) to 1D ordering methodology for brain magnetic resonance imaging (MRI) data, using a space-filling curve (SFC) trajectory, which is adaptive to brain’s shape as captured by MRI. We present the pseudocode of the heuristics for deve...

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Detalles Bibliográficos
Autores principales: Sakoglu, Unal, Bhupati, Lohit, Beheshti, Nazanin, Tsekos, Nikolaos, Johnsson, Lennart
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7304044/
http://dx.doi.org/10.1007/978-3-030-50420-5_48
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author Sakoglu, Unal
Bhupati, Lohit
Beheshti, Nazanin
Tsekos, Nikolaos
Johnsson, Lennart
author_facet Sakoglu, Unal
Bhupati, Lohit
Beheshti, Nazanin
Tsekos, Nikolaos
Johnsson, Lennart
author_sort Sakoglu, Unal
collection PubMed
description In this work, we develop an adaptive, near-optimal, 3-Dimensional (3D) to 1D ordering methodology for brain magnetic resonance imaging (MRI) data, using a space-filling curve (SFC) trajectory, which is adaptive to brain’s shape as captured by MRI. We present the pseudocode of the heuristics for developing the SFC trajectory. We apply this trajectory to functional MRI brain activation maps from a schizophrenia study, compress the data, obtain features, and perform classification of schizophrenia patients vs. normal controls. We compare the classification results with those of a linear ordering trajectory, which has been the traditional method for ordering 3D MRI data to 1D. We report that the adaptive SFC trajectory-based classification performance is superior than the linear ordering trajectory-based classification.
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spelling pubmed-73040442020-06-19 An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification Sakoglu, Unal Bhupati, Lohit Beheshti, Nazanin Tsekos, Nikolaos Johnsson, Lennart Computational Science – ICCS 2020 Article In this work, we develop an adaptive, near-optimal, 3-Dimensional (3D) to 1D ordering methodology for brain magnetic resonance imaging (MRI) data, using a space-filling curve (SFC) trajectory, which is adaptive to brain’s shape as captured by MRI. We present the pseudocode of the heuristics for developing the SFC trajectory. We apply this trajectory to functional MRI brain activation maps from a schizophrenia study, compress the data, obtain features, and perform classification of schizophrenia patients vs. normal controls. We compare the classification results with those of a linear ordering trajectory, which has been the traditional method for ordering 3D MRI data to 1D. We report that the adaptive SFC trajectory-based classification performance is superior than the linear ordering trajectory-based classification. 2020-05-22 /pmc/articles/PMC7304044/ http://dx.doi.org/10.1007/978-3-030-50420-5_48 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Sakoglu, Unal
Bhupati, Lohit
Beheshti, Nazanin
Tsekos, Nikolaos
Johnsson, Lennart
An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification
title An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification
title_full An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification
title_fullStr An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification
title_full_unstemmed An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification
title_short An Adaptive Space-Filling Curve Trajectory for Ordering 3D Datasets to 1D: Application to Brain Magnetic Resonance Imaging Data for Classification
title_sort adaptive space-filling curve trajectory for ordering 3d datasets to 1d: application to brain magnetic resonance imaging data for classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7304044/
http://dx.doi.org/10.1007/978-3-030-50420-5_48
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