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BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation

Laryngeal videoendoscopy is one of the main tools in clinical examinations for voice disorders and voice research. Using high-speed videoendoscopy, it is possible to fully capture the vocal fold oscillations, however, processing the recordings typically involves a time-consuming segmentation of the...

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Autores principales: Gómez, Pablo, Kist, Andreas M., Schlegel, Patrick, Berry, David A., Chhetri, Dinesh K., Dürr, Stephan, Echternach, Matthias, Johnson, Aaron M., Kniesburges, Stefan, Kunduk, Melda, Maryn, Youri, Schützenberger, Anne, Verguts, Monique, Döllinger, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305104/
https://www.ncbi.nlm.nih.gov/pubmed/32561845
http://dx.doi.org/10.1038/s41597-020-0526-3
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author Gómez, Pablo
Kist, Andreas M.
Schlegel, Patrick
Berry, David A.
Chhetri, Dinesh K.
Dürr, Stephan
Echternach, Matthias
Johnson, Aaron M.
Kniesburges, Stefan
Kunduk, Melda
Maryn, Youri
Schützenberger, Anne
Verguts, Monique
Döllinger, Michael
author_facet Gómez, Pablo
Kist, Andreas M.
Schlegel, Patrick
Berry, David A.
Chhetri, Dinesh K.
Dürr, Stephan
Echternach, Matthias
Johnson, Aaron M.
Kniesburges, Stefan
Kunduk, Melda
Maryn, Youri
Schützenberger, Anne
Verguts, Monique
Döllinger, Michael
author_sort Gómez, Pablo
collection PubMed
description Laryngeal videoendoscopy is one of the main tools in clinical examinations for voice disorders and voice research. Using high-speed videoendoscopy, it is possible to fully capture the vocal fold oscillations, however, processing the recordings typically involves a time-consuming segmentation of the glottal area by trained experts. Even though automatic methods have been proposed and the task is particularly suited for deep learning methods, there are no public datasets and benchmarks available to compare methods and to allow training of generalizing deep learning models. In an international collaboration of researchers from seven institutions from the EU and USA, we have created BAGLS, a large, multihospital dataset of 59,250 high-speed videoendoscopy frames with individually annotated segmentation masks. The frames are based on 640 recordings of healthy and disordered subjects that were recorded with varying technical equipment by numerous clinicians. The BAGLS dataset will allow an objective comparison of glottis segmentation methods and will enable interested researchers to train their own models and compare their methods.
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spelling pubmed-73051042020-06-22 BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation Gómez, Pablo Kist, Andreas M. Schlegel, Patrick Berry, David A. Chhetri, Dinesh K. Dürr, Stephan Echternach, Matthias Johnson, Aaron M. Kniesburges, Stefan Kunduk, Melda Maryn, Youri Schützenberger, Anne Verguts, Monique Döllinger, Michael Sci Data Data Descriptor Laryngeal videoendoscopy is one of the main tools in clinical examinations for voice disorders and voice research. Using high-speed videoendoscopy, it is possible to fully capture the vocal fold oscillations, however, processing the recordings typically involves a time-consuming segmentation of the glottal area by trained experts. Even though automatic methods have been proposed and the task is particularly suited for deep learning methods, there are no public datasets and benchmarks available to compare methods and to allow training of generalizing deep learning models. In an international collaboration of researchers from seven institutions from the EU and USA, we have created BAGLS, a large, multihospital dataset of 59,250 high-speed videoendoscopy frames with individually annotated segmentation masks. The frames are based on 640 recordings of healthy and disordered subjects that were recorded with varying technical equipment by numerous clinicians. The BAGLS dataset will allow an objective comparison of glottis segmentation methods and will enable interested researchers to train their own models and compare their methods. Nature Publishing Group UK 2020-06-19 /pmc/articles/PMC7305104/ /pubmed/32561845 http://dx.doi.org/10.1038/s41597-020-0526-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Gómez, Pablo
Kist, Andreas M.
Schlegel, Patrick
Berry, David A.
Chhetri, Dinesh K.
Dürr, Stephan
Echternach, Matthias
Johnson, Aaron M.
Kniesburges, Stefan
Kunduk, Melda
Maryn, Youri
Schützenberger, Anne
Verguts, Monique
Döllinger, Michael
BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation
title BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation
title_full BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation
title_fullStr BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation
title_full_unstemmed BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation
title_short BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation
title_sort bagls, a multihospital benchmark for automatic glottis segmentation
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305104/
https://www.ncbi.nlm.nih.gov/pubmed/32561845
http://dx.doi.org/10.1038/s41597-020-0526-3
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