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BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation
Laryngeal videoendoscopy is one of the main tools in clinical examinations for voice disorders and voice research. Using high-speed videoendoscopy, it is possible to fully capture the vocal fold oscillations, however, processing the recordings typically involves a time-consuming segmentation of the...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305104/ https://www.ncbi.nlm.nih.gov/pubmed/32561845 http://dx.doi.org/10.1038/s41597-020-0526-3 |
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author | Gómez, Pablo Kist, Andreas M. Schlegel, Patrick Berry, David A. Chhetri, Dinesh K. Dürr, Stephan Echternach, Matthias Johnson, Aaron M. Kniesburges, Stefan Kunduk, Melda Maryn, Youri Schützenberger, Anne Verguts, Monique Döllinger, Michael |
author_facet | Gómez, Pablo Kist, Andreas M. Schlegel, Patrick Berry, David A. Chhetri, Dinesh K. Dürr, Stephan Echternach, Matthias Johnson, Aaron M. Kniesburges, Stefan Kunduk, Melda Maryn, Youri Schützenberger, Anne Verguts, Monique Döllinger, Michael |
author_sort | Gómez, Pablo |
collection | PubMed |
description | Laryngeal videoendoscopy is one of the main tools in clinical examinations for voice disorders and voice research. Using high-speed videoendoscopy, it is possible to fully capture the vocal fold oscillations, however, processing the recordings typically involves a time-consuming segmentation of the glottal area by trained experts. Even though automatic methods have been proposed and the task is particularly suited for deep learning methods, there are no public datasets and benchmarks available to compare methods and to allow training of generalizing deep learning models. In an international collaboration of researchers from seven institutions from the EU and USA, we have created BAGLS, a large, multihospital dataset of 59,250 high-speed videoendoscopy frames with individually annotated segmentation masks. The frames are based on 640 recordings of healthy and disordered subjects that were recorded with varying technical equipment by numerous clinicians. The BAGLS dataset will allow an objective comparison of glottis segmentation methods and will enable interested researchers to train their own models and compare their methods. |
format | Online Article Text |
id | pubmed-7305104 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73051042020-06-22 BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation Gómez, Pablo Kist, Andreas M. Schlegel, Patrick Berry, David A. Chhetri, Dinesh K. Dürr, Stephan Echternach, Matthias Johnson, Aaron M. Kniesburges, Stefan Kunduk, Melda Maryn, Youri Schützenberger, Anne Verguts, Monique Döllinger, Michael Sci Data Data Descriptor Laryngeal videoendoscopy is one of the main tools in clinical examinations for voice disorders and voice research. Using high-speed videoendoscopy, it is possible to fully capture the vocal fold oscillations, however, processing the recordings typically involves a time-consuming segmentation of the glottal area by trained experts. Even though automatic methods have been proposed and the task is particularly suited for deep learning methods, there are no public datasets and benchmarks available to compare methods and to allow training of generalizing deep learning models. In an international collaboration of researchers from seven institutions from the EU and USA, we have created BAGLS, a large, multihospital dataset of 59,250 high-speed videoendoscopy frames with individually annotated segmentation masks. The frames are based on 640 recordings of healthy and disordered subjects that were recorded with varying technical equipment by numerous clinicians. The BAGLS dataset will allow an objective comparison of glottis segmentation methods and will enable interested researchers to train their own models and compare their methods. Nature Publishing Group UK 2020-06-19 /pmc/articles/PMC7305104/ /pubmed/32561845 http://dx.doi.org/10.1038/s41597-020-0526-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Gómez, Pablo Kist, Andreas M. Schlegel, Patrick Berry, David A. Chhetri, Dinesh K. Dürr, Stephan Echternach, Matthias Johnson, Aaron M. Kniesburges, Stefan Kunduk, Melda Maryn, Youri Schützenberger, Anne Verguts, Monique Döllinger, Michael BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation |
title | BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation |
title_full | BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation |
title_fullStr | BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation |
title_full_unstemmed | BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation |
title_short | BAGLS, a multihospital Benchmark for Automatic Glottis Segmentation |
title_sort | bagls, a multihospital benchmark for automatic glottis segmentation |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305104/ https://www.ncbi.nlm.nih.gov/pubmed/32561845 http://dx.doi.org/10.1038/s41597-020-0526-3 |
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