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Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data
Spindle event detection is a key component in analyzing human sleep. However, detection of these oscillatory patterns by experts is time consuming and costly. Automated detection algorithms are cost efficient and reproducible but require robust datasets to be trained and validated. Using the MODA (M...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305234/ https://www.ncbi.nlm.nih.gov/pubmed/32561751 http://dx.doi.org/10.1038/s41597-020-0533-4 |
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author | Lacourse, Karine Yetton, Ben Mednick, Sara Warby, Simon C. |
author_facet | Lacourse, Karine Yetton, Ben Mednick, Sara Warby, Simon C. |
author_sort | Lacourse, Karine |
collection | PubMed |
description | Spindle event detection is a key component in analyzing human sleep. However, detection of these oscillatory patterns by experts is time consuming and costly. Automated detection algorithms are cost efficient and reproducible but require robust datasets to be trained and validated. Using the MODA (Massive Online Data Annotation) platform, we used crowdsourcing to produce a large open-source dataset of high quality, human-scored sleep spindles (5342 spindles, from 180 subjects). We evaluated the performance of three subtype scorers: “experts, researchers and non-experts”, as well as 7 previously published spindle detection algorithms. Our findings show that only two algorithms had performance scores similar to human experts. Furthermore, the human scorers agreed on the average spindle characteristics (density, duration and amplitude), but there were significant age and sex differences (also observed in the set of detected spindles). This study demonstrates how the MODA platform can be used to generate a highly valid open source standardized dataset for researchers to train, validate and compare automated detectors of biological signals such as the EEG. |
format | Online Article Text |
id | pubmed-7305234 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73052342020-06-26 Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data Lacourse, Karine Yetton, Ben Mednick, Sara Warby, Simon C. Sci Data Analysis Spindle event detection is a key component in analyzing human sleep. However, detection of these oscillatory patterns by experts is time consuming and costly. Automated detection algorithms are cost efficient and reproducible but require robust datasets to be trained and validated. Using the MODA (Massive Online Data Annotation) platform, we used crowdsourcing to produce a large open-source dataset of high quality, human-scored sleep spindles (5342 spindles, from 180 subjects). We evaluated the performance of three subtype scorers: “experts, researchers and non-experts”, as well as 7 previously published spindle detection algorithms. Our findings show that only two algorithms had performance scores similar to human experts. Furthermore, the human scorers agreed on the average spindle characteristics (density, duration and amplitude), but there were significant age and sex differences (also observed in the set of detected spindles). This study demonstrates how the MODA platform can be used to generate a highly valid open source standardized dataset for researchers to train, validate and compare automated detectors of biological signals such as the EEG. Nature Publishing Group UK 2020-06-19 /pmc/articles/PMC7305234/ /pubmed/32561751 http://dx.doi.org/10.1038/s41597-020-0533-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Analysis Lacourse, Karine Yetton, Ben Mednick, Sara Warby, Simon C. Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data |
title | Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data |
title_full | Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data |
title_fullStr | Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data |
title_full_unstemmed | Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data |
title_short | Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data |
title_sort | massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from eeg data |
topic | Analysis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305234/ https://www.ncbi.nlm.nih.gov/pubmed/32561751 http://dx.doi.org/10.1038/s41597-020-0533-4 |
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