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A clinically and genomically annotated nerve sheath tumor biospecimen repository
Nerve sheath tumors occur as a heterogeneous group of neoplasms in patients with neurofibromatosis type 1 (NF1). The malignant form represents the most common cause of death in people with NF1, and even when benign, these tumors can result in significant disfigurement, neurologic dysfunction, and a...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305302/ https://www.ncbi.nlm.nih.gov/pubmed/32561749 http://dx.doi.org/10.1038/s41597-020-0508-5 |
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author | Pollard, Kai Banerjee, Jineta Doan, Xengie Wang, Jiawan Guo, Xindi Allaway, Robert Langmead, Shannon Slobogean, Bronwyn Meyer, Christian F. Loeb, David M. Morris, Carol D. Belzberg, Allan J. Blakeley, Jaishri O. Rodriguez, Fausto J. Guinney, Justin Gosline, Sara J. C. Pratilas, Christine A. |
author_facet | Pollard, Kai Banerjee, Jineta Doan, Xengie Wang, Jiawan Guo, Xindi Allaway, Robert Langmead, Shannon Slobogean, Bronwyn Meyer, Christian F. Loeb, David M. Morris, Carol D. Belzberg, Allan J. Blakeley, Jaishri O. Rodriguez, Fausto J. Guinney, Justin Gosline, Sara J. C. Pratilas, Christine A. |
author_sort | Pollard, Kai |
collection | PubMed |
description | Nerve sheath tumors occur as a heterogeneous group of neoplasms in patients with neurofibromatosis type 1 (NF1). The malignant form represents the most common cause of death in people with NF1, and even when benign, these tumors can result in significant disfigurement, neurologic dysfunction, and a range of profound symptoms. Lack of human tissue across the peripheral nerve tumors common in NF1 has been a major limitation in the development of new therapies. To address this unmet need, we have created an annotated collection of patient tumor samples, patient-derived cell lines, and patient-derived xenografts, and carried out high-throughput genomic and transcriptomic characterization to serve as a resource for further biologic and preclinical therapeutic studies. In this work, we release genomic and transcriptomic datasets comprised of 55 tumor samples derived from 23 individuals, complete with clinical annotation. All data are publicly available through the NF Data Portal and at http://synapse.org/jhubiobank. |
format | Online Article Text |
id | pubmed-7305302 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73053022020-06-26 A clinically and genomically annotated nerve sheath tumor biospecimen repository Pollard, Kai Banerjee, Jineta Doan, Xengie Wang, Jiawan Guo, Xindi Allaway, Robert Langmead, Shannon Slobogean, Bronwyn Meyer, Christian F. Loeb, David M. Morris, Carol D. Belzberg, Allan J. Blakeley, Jaishri O. Rodriguez, Fausto J. Guinney, Justin Gosline, Sara J. C. Pratilas, Christine A. Sci Data Data Descriptor Nerve sheath tumors occur as a heterogeneous group of neoplasms in patients with neurofibromatosis type 1 (NF1). The malignant form represents the most common cause of death in people with NF1, and even when benign, these tumors can result in significant disfigurement, neurologic dysfunction, and a range of profound symptoms. Lack of human tissue across the peripheral nerve tumors common in NF1 has been a major limitation in the development of new therapies. To address this unmet need, we have created an annotated collection of patient tumor samples, patient-derived cell lines, and patient-derived xenografts, and carried out high-throughput genomic and transcriptomic characterization to serve as a resource for further biologic and preclinical therapeutic studies. In this work, we release genomic and transcriptomic datasets comprised of 55 tumor samples derived from 23 individuals, complete with clinical annotation. All data are publicly available through the NF Data Portal and at http://synapse.org/jhubiobank. Nature Publishing Group UK 2020-06-19 /pmc/articles/PMC7305302/ /pubmed/32561749 http://dx.doi.org/10.1038/s41597-020-0508-5 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Pollard, Kai Banerjee, Jineta Doan, Xengie Wang, Jiawan Guo, Xindi Allaway, Robert Langmead, Shannon Slobogean, Bronwyn Meyer, Christian F. Loeb, David M. Morris, Carol D. Belzberg, Allan J. Blakeley, Jaishri O. Rodriguez, Fausto J. Guinney, Justin Gosline, Sara J. C. Pratilas, Christine A. A clinically and genomically annotated nerve sheath tumor biospecimen repository |
title | A clinically and genomically annotated nerve sheath tumor biospecimen repository |
title_full | A clinically and genomically annotated nerve sheath tumor biospecimen repository |
title_fullStr | A clinically and genomically annotated nerve sheath tumor biospecimen repository |
title_full_unstemmed | A clinically and genomically annotated nerve sheath tumor biospecimen repository |
title_short | A clinically and genomically annotated nerve sheath tumor biospecimen repository |
title_sort | clinically and genomically annotated nerve sheath tumor biospecimen repository |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305302/ https://www.ncbi.nlm.nih.gov/pubmed/32561749 http://dx.doi.org/10.1038/s41597-020-0508-5 |
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