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The democratization of bioinformatics: A software engineering perspective
Today, thanks to advances in cloud computing, it is possible for small teams of software developers to produce internet-scale products, a feat that was previously the preserve of large organizations. Herein, we describe how these advances in software engineering can be made more readily available to...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305685/ https://www.ncbi.nlm.nih.gov/pubmed/32562490 http://dx.doi.org/10.1093/gigascience/giaa063 |
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author | Lawlor, Brendan Sleator, Roy D |
author_facet | Lawlor, Brendan Sleator, Roy D |
author_sort | Lawlor, Brendan |
collection | PubMed |
description | Today, thanks to advances in cloud computing, it is possible for small teams of software developers to produce internet-scale products, a feat that was previously the preserve of large organizations. Herein, we describe how these advances in software engineering can be made more readily available to bioinformaticians. In the same way that cloud computing has democratized access to distributed systems engineering for generalist software engineers, access to scalable and reproducible bioinformatic engineering can be democratized for generalist bioinformaticians and biologists. We present solutions, based on our own efforts, to achieve this goal. |
format | Online Article Text |
id | pubmed-7305685 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-73056852020-06-24 The democratization of bioinformatics: A software engineering perspective Lawlor, Brendan Sleator, Roy D Gigascience Commentary Today, thanks to advances in cloud computing, it is possible for small teams of software developers to produce internet-scale products, a feat that was previously the preserve of large organizations. Herein, we describe how these advances in software engineering can be made more readily available to bioinformaticians. In the same way that cloud computing has democratized access to distributed systems engineering for generalist software engineers, access to scalable and reproducible bioinformatic engineering can be democratized for generalist bioinformaticians and biologists. We present solutions, based on our own efforts, to achieve this goal. Oxford University Press 2020-06-20 /pmc/articles/PMC7305685/ /pubmed/32562490 http://dx.doi.org/10.1093/gigascience/giaa063 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Commentary Lawlor, Brendan Sleator, Roy D The democratization of bioinformatics: A software engineering perspective |
title | The democratization of bioinformatics: A software engineering perspective |
title_full | The democratization of bioinformatics: A software engineering perspective |
title_fullStr | The democratization of bioinformatics: A software engineering perspective |
title_full_unstemmed | The democratization of bioinformatics: A software engineering perspective |
title_short | The democratization of bioinformatics: A software engineering perspective |
title_sort | democratization of bioinformatics: a software engineering perspective |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305685/ https://www.ncbi.nlm.nih.gov/pubmed/32562490 http://dx.doi.org/10.1093/gigascience/giaa063 |
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