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The democratization of bioinformatics: A software engineering perspective

Today, thanks to advances in cloud computing, it is possible for small teams of software developers to produce internet-scale products, a feat that was previously the preserve of large organizations. Herein, we describe how these advances in software engineering can be made more readily available to...

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Detalles Bibliográficos
Autores principales: Lawlor, Brendan, Sleator, Roy D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305685/
https://www.ncbi.nlm.nih.gov/pubmed/32562490
http://dx.doi.org/10.1093/gigascience/giaa063
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author Lawlor, Brendan
Sleator, Roy D
author_facet Lawlor, Brendan
Sleator, Roy D
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description Today, thanks to advances in cloud computing, it is possible for small teams of software developers to produce internet-scale products, a feat that was previously the preserve of large organizations. Herein, we describe how these advances in software engineering can be made more readily available to bioinformaticians. In the same way that cloud computing has democratized access to distributed systems engineering for generalist software engineers, access to scalable and reproducible bioinformatic engineering can be democratized for generalist bioinformaticians and biologists. We present solutions, based on our own efforts, to achieve this goal.
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spelling pubmed-73056852020-06-24 The democratization of bioinformatics: A software engineering perspective Lawlor, Brendan Sleator, Roy D Gigascience Commentary Today, thanks to advances in cloud computing, it is possible for small teams of software developers to produce internet-scale products, a feat that was previously the preserve of large organizations. Herein, we describe how these advances in software engineering can be made more readily available to bioinformaticians. In the same way that cloud computing has democratized access to distributed systems engineering for generalist software engineers, access to scalable and reproducible bioinformatic engineering can be democratized for generalist bioinformaticians and biologists. We present solutions, based on our own efforts, to achieve this goal. Oxford University Press 2020-06-20 /pmc/articles/PMC7305685/ /pubmed/32562490 http://dx.doi.org/10.1093/gigascience/giaa063 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Lawlor, Brendan
Sleator, Roy D
The democratization of bioinformatics: A software engineering perspective
title The democratization of bioinformatics: A software engineering perspective
title_full The democratization of bioinformatics: A software engineering perspective
title_fullStr The democratization of bioinformatics: A software engineering perspective
title_full_unstemmed The democratization of bioinformatics: A software engineering perspective
title_short The democratization of bioinformatics: A software engineering perspective
title_sort democratization of bioinformatics: a software engineering perspective
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7305685/
https://www.ncbi.nlm.nih.gov/pubmed/32562490
http://dx.doi.org/10.1093/gigascience/giaa063
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