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A parallel solution to finding nodal neighbors in generic meshes

In this paper we specifically present a parallel solution to finding the one-ring neighboring nodes and elements for each vertex in generic meshes. The finding of nodal neighbors is computationally straightforward but expensive for large meshes. To improve the efficiency, the parallelism is adopted...

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Detalles Bibliográficos
Autores principales: Qi, Pian, Mei, Gang, Xu, Nengxiong, Tian, Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7306601/
https://www.ncbi.nlm.nih.gov/pubmed/32596136
http://dx.doi.org/10.1016/j.mex.2020.100954
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author Qi, Pian
Mei, Gang
Xu, Nengxiong
Tian, Hong
author_facet Qi, Pian
Mei, Gang
Xu, Nengxiong
Tian, Hong
author_sort Qi, Pian
collection PubMed
description In this paper we specifically present a parallel solution to finding the one-ring neighboring nodes and elements for each vertex in generic meshes. The finding of nodal neighbors is computationally straightforward but expensive for large meshes. To improve the efficiency, the parallelism is adopted by utilizing the modern Graphics Processing Unit (GPU). The presented parallel solution is heavily dependent on the parallel sorting, scan, and reduction. Our parallel solution is efficient and easy to implement, but requires the allocation of large device memory. • Our parallel solution can generate the speedups of approximately 55 and 90 over the serial solution when finding the neighboring nodes and elements, respectively. • It is easy to implement due to the reason it does not need to perform the mesh-coloring before finding neighbors; • There are no complex data structures, only integer arrays are needed, which makes our parallel solution very effective.
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spelling pubmed-73066012020-06-25 A parallel solution to finding nodal neighbors in generic meshes Qi, Pian Mei, Gang Xu, Nengxiong Tian, Hong MethodsX Computer Science In this paper we specifically present a parallel solution to finding the one-ring neighboring nodes and elements for each vertex in generic meshes. The finding of nodal neighbors is computationally straightforward but expensive for large meshes. To improve the efficiency, the parallelism is adopted by utilizing the modern Graphics Processing Unit (GPU). The presented parallel solution is heavily dependent on the parallel sorting, scan, and reduction. Our parallel solution is efficient and easy to implement, but requires the allocation of large device memory. • Our parallel solution can generate the speedups of approximately 55 and 90 over the serial solution when finding the neighboring nodes and elements, respectively. • It is easy to implement due to the reason it does not need to perform the mesh-coloring before finding neighbors; • There are no complex data structures, only integer arrays are needed, which makes our parallel solution very effective. Elsevier 2020-06-09 /pmc/articles/PMC7306601/ /pubmed/32596136 http://dx.doi.org/10.1016/j.mex.2020.100954 Text en © 2020 The Author(s). Published by Elsevier B.V. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Computer Science
Qi, Pian
Mei, Gang
Xu, Nengxiong
Tian, Hong
A parallel solution to finding nodal neighbors in generic meshes
title A parallel solution to finding nodal neighbors in generic meshes
title_full A parallel solution to finding nodal neighbors in generic meshes
title_fullStr A parallel solution to finding nodal neighbors in generic meshes
title_full_unstemmed A parallel solution to finding nodal neighbors in generic meshes
title_short A parallel solution to finding nodal neighbors in generic meshes
title_sort parallel solution to finding nodal neighbors in generic meshes
topic Computer Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7306601/
https://www.ncbi.nlm.nih.gov/pubmed/32596136
http://dx.doi.org/10.1016/j.mex.2020.100954
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