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A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction

Electronic health records (EHRs) have been widely used to help physicians to make decisions by predicting medical events such as diseases, prescriptions, outcomes, and so on. How to represent patient longitudinal medical data is the key to making these predictions. Recurrent neural network (RNN) is...

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Detalles Bibliográficos
Autores principales: Liu, Sicen, Li, Tao, Ding, Haoyang, Tang, Buzhou, Wang, Xiaolong, Chen, Qingcai, Yan, Jun, Zhou, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7308113/
https://www.ncbi.nlm.nih.gov/pubmed/33727983
http://dx.doi.org/10.1007/s13042-020-01155-x
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author Liu, Sicen
Li, Tao
Ding, Haoyang
Tang, Buzhou
Wang, Xiaolong
Chen, Qingcai
Yan, Jun
Zhou, Yi
author_facet Liu, Sicen
Li, Tao
Ding, Haoyang
Tang, Buzhou
Wang, Xiaolong
Chen, Qingcai
Yan, Jun
Zhou, Yi
author_sort Liu, Sicen
collection PubMed
description Electronic health records (EHRs) have been widely used to help physicians to make decisions by predicting medical events such as diseases, prescriptions, outcomes, and so on. How to represent patient longitudinal medical data is the key to making these predictions. Recurrent neural network (RNN) is a popular model for patient longitudinal medical data representation from the view of patient status sequences, but it cannot represent complex interactions among different types of medical information, i.e., temporal medical event graphs, which can be represented by graph neural network (GNN). In this paper, we propose a hybrid method of RNN and GNN, called RGNN, for next-period prescription prediction from two views, where RNN is used to represent patient status sequences, and GNN is used to represent temporal medical event graphs. Experiments conducted on the public MIMIC-III ICU data show that the proposed method is effective for next-period prescription prediction, and RNN and GNN are mutually complementary.
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spelling pubmed-73081132020-06-23 A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction Liu, Sicen Li, Tao Ding, Haoyang Tang, Buzhou Wang, Xiaolong Chen, Qingcai Yan, Jun Zhou, Yi Int J Mach Learn Cybern Original Article Electronic health records (EHRs) have been widely used to help physicians to make decisions by predicting medical events such as diseases, prescriptions, outcomes, and so on. How to represent patient longitudinal medical data is the key to making these predictions. Recurrent neural network (RNN) is a popular model for patient longitudinal medical data representation from the view of patient status sequences, but it cannot represent complex interactions among different types of medical information, i.e., temporal medical event graphs, which can be represented by graph neural network (GNN). In this paper, we propose a hybrid method of RNN and GNN, called RGNN, for next-period prescription prediction from two views, where RNN is used to represent patient status sequences, and GNN is used to represent temporal medical event graphs. Experiments conducted on the public MIMIC-III ICU data show that the proposed method is effective for next-period prescription prediction, and RNN and GNN are mutually complementary. Springer Berlin Heidelberg 2020-06-23 2020 /pmc/articles/PMC7308113/ /pubmed/33727983 http://dx.doi.org/10.1007/s13042-020-01155-x Text en © Springer-Verlag GmbH Germany, part of Springer Nature 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Liu, Sicen
Li, Tao
Ding, Haoyang
Tang, Buzhou
Wang, Xiaolong
Chen, Qingcai
Yan, Jun
Zhou, Yi
A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction
title A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction
title_full A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction
title_fullStr A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction
title_full_unstemmed A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction
title_short A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction
title_sort hybrid method of recurrent neural network and graph neural network for next-period prescription prediction
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7308113/
https://www.ncbi.nlm.nih.gov/pubmed/33727983
http://dx.doi.org/10.1007/s13042-020-01155-x
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