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MorphoCluster: Efficient Annotation of Plankton Images by Clustering
In this work, we present MorphoCluster, a software tool for data-driven, fast, and accurate annotation of large image data sets. While already having surpassed the annotation rate of human experts, volume and complexity of marine data will continue to increase in the coming years. Still, this data r...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7308937/ https://www.ncbi.nlm.nih.gov/pubmed/32481730 http://dx.doi.org/10.3390/s20113060 |
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author | Schröder, Simon-Martin Kiko, Rainer Koch, Reinhard |
author_facet | Schröder, Simon-Martin Kiko, Rainer Koch, Reinhard |
author_sort | Schröder, Simon-Martin |
collection | PubMed |
description | In this work, we present MorphoCluster, a software tool for data-driven, fast, and accurate annotation of large image data sets. While already having surpassed the annotation rate of human experts, volume and complexity of marine data will continue to increase in the coming years. Still, this data requires interpretation. MorphoCluster augments the human ability to discover patterns and perform object classification in large amounts of data by embedding unsupervised clustering in an interactive process. By aggregating similar images into clusters, our novel approach to image annotation increases consistency, multiplies the throughput of an annotator, and allows experts to adapt the granularity of their sorting scheme to the structure in the data. By sorting a set of 1.2 M objects into 280 data-driven classes in 71 h (16 k objects per hour), with 90% of these classes having a precision of 0.889 or higher. This shows that MorphoCluster is at the same time fast, accurate, and consistent; provides a fine-grained and data-driven classification; and enables novelty detection. |
format | Online Article Text |
id | pubmed-7308937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-73089372020-06-25 MorphoCluster: Efficient Annotation of Plankton Images by Clustering Schröder, Simon-Martin Kiko, Rainer Koch, Reinhard Sensors (Basel) Article In this work, we present MorphoCluster, a software tool for data-driven, fast, and accurate annotation of large image data sets. While already having surpassed the annotation rate of human experts, volume and complexity of marine data will continue to increase in the coming years. Still, this data requires interpretation. MorphoCluster augments the human ability to discover patterns and perform object classification in large amounts of data by embedding unsupervised clustering in an interactive process. By aggregating similar images into clusters, our novel approach to image annotation increases consistency, multiplies the throughput of an annotator, and allows experts to adapt the granularity of their sorting scheme to the structure in the data. By sorting a set of 1.2 M objects into 280 data-driven classes in 71 h (16 k objects per hour), with 90% of these classes having a precision of 0.889 or higher. This shows that MorphoCluster is at the same time fast, accurate, and consistent; provides a fine-grained and data-driven classification; and enables novelty detection. MDPI 2020-05-28 /pmc/articles/PMC7308937/ /pubmed/32481730 http://dx.doi.org/10.3390/s20113060 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Schröder, Simon-Martin Kiko, Rainer Koch, Reinhard MorphoCluster: Efficient Annotation of Plankton Images by Clustering |
title | MorphoCluster: Efficient Annotation of Plankton Images by Clustering |
title_full | MorphoCluster: Efficient Annotation of Plankton Images by Clustering |
title_fullStr | MorphoCluster: Efficient Annotation of Plankton Images by Clustering |
title_full_unstemmed | MorphoCluster: Efficient Annotation of Plankton Images by Clustering |
title_short | MorphoCluster: Efficient Annotation of Plankton Images by Clustering |
title_sort | morphocluster: efficient annotation of plankton images by clustering |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7308937/ https://www.ncbi.nlm.nih.gov/pubmed/32481730 http://dx.doi.org/10.3390/s20113060 |
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