Cargando…
A Surface Site Interaction Point Method for Dissipative Particle Dynamics Parametrization: Application to Alkyl Ethoxylate Surfactant Self-Assembly
[Image: see text] Dissipative particle dynamics (DPD) is a coarse-grained approach to the simulation of large supramolecular systems, but one limitation has been that the parameters required to describe the noncovalent interactions between beads are not readily accessible. A first-principles computa...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2020
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7309324/ https://www.ncbi.nlm.nih.gov/pubmed/32510951 http://dx.doi.org/10.1021/acs.jpcb.0c01895 |
_version_ | 1783549183949537280 |
---|---|
author | Lavagnini, Ennio Cook, Joanne L. Warren, Patrick B. Williamson, Mark J. Hunter, Christopher A. |
author_facet | Lavagnini, Ennio Cook, Joanne L. Warren, Patrick B. Williamson, Mark J. Hunter, Christopher A. |
author_sort | Lavagnini, Ennio |
collection | PubMed |
description | [Image: see text] Dissipative particle dynamics (DPD) is a coarse-grained approach to the simulation of large supramolecular systems, but one limitation has been that the parameters required to describe the noncovalent interactions between beads are not readily accessible. A first-principles computational method has been developed so that bead interaction parameters can be calculated directly from ab initio gas-phase molecular electrostatic potential surfaces of the molecular fragments that represent the beads. A footprinting algorithm converts the molecular electrostatic potential surfaces into a discrete set of surface site interaction points (SSIPs), and these SSIPs are used in the SSIMPLE (surface site interaction model for the properties of liquids at equilibrium) algorithm to calculate the free energies of transfer of one bead into a solution of any other bead. The bead transfer free energies are then converted into the required DPD interaction parameters for all pairwise combinations of different beads. The reliability of the parameters was demonstrated using DPD simulations of a range of alkyl ethoxylate surfactants. The simulations reproduce the experimentally determined values of the critical micelle concentration and mean aggregation number well for all 22 surfactants studied. |
format | Online Article Text |
id | pubmed-7309324 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-73093242020-06-23 A Surface Site Interaction Point Method for Dissipative Particle Dynamics Parametrization: Application to Alkyl Ethoxylate Surfactant Self-Assembly Lavagnini, Ennio Cook, Joanne L. Warren, Patrick B. Williamson, Mark J. Hunter, Christopher A. J Phys Chem B [Image: see text] Dissipative particle dynamics (DPD) is a coarse-grained approach to the simulation of large supramolecular systems, but one limitation has been that the parameters required to describe the noncovalent interactions between beads are not readily accessible. A first-principles computational method has been developed so that bead interaction parameters can be calculated directly from ab initio gas-phase molecular electrostatic potential surfaces of the molecular fragments that represent the beads. A footprinting algorithm converts the molecular electrostatic potential surfaces into a discrete set of surface site interaction points (SSIPs), and these SSIPs are used in the SSIMPLE (surface site interaction model for the properties of liquids at equilibrium) algorithm to calculate the free energies of transfer of one bead into a solution of any other bead. The bead transfer free energies are then converted into the required DPD interaction parameters for all pairwise combinations of different beads. The reliability of the parameters was demonstrated using DPD simulations of a range of alkyl ethoxylate surfactants. The simulations reproduce the experimentally determined values of the critical micelle concentration and mean aggregation number well for all 22 surfactants studied. American Chemical Society 2020-06-08 2020-06-18 /pmc/articles/PMC7309324/ /pubmed/32510951 http://dx.doi.org/10.1021/acs.jpcb.0c01895 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Lavagnini, Ennio Cook, Joanne L. Warren, Patrick B. Williamson, Mark J. Hunter, Christopher A. A Surface Site Interaction Point Method for Dissipative Particle Dynamics Parametrization: Application to Alkyl Ethoxylate Surfactant Self-Assembly |
title | A Surface Site Interaction Point Method for Dissipative
Particle Dynamics Parametrization: Application to Alkyl Ethoxylate
Surfactant Self-Assembly |
title_full | A Surface Site Interaction Point Method for Dissipative
Particle Dynamics Parametrization: Application to Alkyl Ethoxylate
Surfactant Self-Assembly |
title_fullStr | A Surface Site Interaction Point Method for Dissipative
Particle Dynamics Parametrization: Application to Alkyl Ethoxylate
Surfactant Self-Assembly |
title_full_unstemmed | A Surface Site Interaction Point Method for Dissipative
Particle Dynamics Parametrization: Application to Alkyl Ethoxylate
Surfactant Self-Assembly |
title_short | A Surface Site Interaction Point Method for Dissipative
Particle Dynamics Parametrization: Application to Alkyl Ethoxylate
Surfactant Self-Assembly |
title_sort | surface site interaction point method for dissipative
particle dynamics parametrization: application to alkyl ethoxylate
surfactant self-assembly |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7309324/ https://www.ncbi.nlm.nih.gov/pubmed/32510951 http://dx.doi.org/10.1021/acs.jpcb.0c01895 |
work_keys_str_mv | AT lavagniniennio asurfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT cookjoannel asurfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT warrenpatrickb asurfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT williamsonmarkj asurfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT hunterchristophera asurfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT lavagniniennio surfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT cookjoannel surfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT warrenpatrickb surfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT williamsonmarkj surfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly AT hunterchristophera surfacesiteinteractionpointmethodfordissipativeparticledynamicsparametrizationapplicationtoalkylethoxylatesurfactantselfassembly |